Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq89 104 2e-17 seq78 98.7 9e-16 >seq89 Length=276290 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 |||||||||||||| || || | ||||| |||||| | ||| |||| | | | Sbjct 106342 TCTTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCCAATTGTCTACCAGCAAAT 106283 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || || | ||||||||| || || || ||||||||||| || ||| ||| | | Sbjct 106282 ATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTC 106223 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 |||| |||||| | || || ||||| | || | |||||||||||||||||||||| Sbjct 106222 TCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACA 106163 Query 132113 AAAATCTGCATG 132124 || || |||||| Sbjct 106162 AATATTTGCATG 106151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 || ||||||||||| || || | ||||| |||||| | |||||| | | | Sbjct 106570 TCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCCAATATTTTACCAGCAAAT 106511 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG-GTAATTTTTTGTTTCAACTG 132051 || || | ||||||||| || || || ||||||||||| ||| | |||| || ||| Sbjct 106510 ATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTA--TCTTTGCTTTAACAT 106453 Query 132052 T-TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 | || | |||||| | || || ||||| | || | |||||||||||||||||||||| Sbjct 106452 TCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTA 106393 Query 132111 TGAAAATCTGCATG 132124 || || |||||| Sbjct 106392 CAAATATTTGCATG 106379 >seq78 Length=312069 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||| ||| | ||||| |||||| | ||| || |||| | Sbjct 172681 GATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCA 172622 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || || |||||||| || ||||| ||| | Sbjct 172621 AAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACA 172562 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | ||||| ||||| | || | || || || || || || ||| Sbjct 172561 TTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTT 172502 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 172501 ACGAAAATCTGCAT 172488 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| | ||| || || | | Sbjct 172909 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTTCCAGCA 172850 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||||||||| || || || ||||| || || || || || | Sbjct 172849 AAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACA 172790 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | ||||| ||||| | || | || || || || || || ||| Sbjct 172789 TTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTT 172730 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 172729 ACGAAAATCTGCAT 172716 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| |||||||| || || || || |||||| ||||| || || | | Sbjct 172453 GACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCA 172394 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || || ||||| || || ||| || ||| | Sbjct 172393 AAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTTACG 172334 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||||| ||||| ||||| | || | || || || |||| ||| || Sbjct 172333 TTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTG 172274 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 172273 ACAAAGATTTGCAT 172260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476531379539280