Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq89 93.3 4e-14 >seq89 Length=276290 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||||||||| | || || ||| | || || | ||||| ||| | Sbjct 106151 CATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTC 106210 Query 25234 CGATACTATCGAGCA-AGTAAAACAAAAAATTAC-CGATAAAGAGGGTATACCGCCCGAT 25291 |||||||| ||| | | |||| |||| | ||| |||||||| || || || || ||| Sbjct 106211 TGATACTATGGAGAATATTAAAGCAAAGA--TACAGGATAAAGAAGGAATCCCACCTGAT 106268 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || |||||||| | | || | |||| | ||||||| | | | || ||||| Sbjct 106269 CAACAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAGATTAT 106328 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || |||||||||||| || | |||||||| Sbjct 106329 AACATTCAAAAAGAAAGTACGTTGCATTTAGT 106360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||||||||| | || || ||| | || || | ||||| ||| | Sbjct 106379 CATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTC 106438 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| ||| | || ||| ||| || |||||||| || || || || ||||| Sbjct 106439 TGATACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCA 106498 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || |||||||| | | || ||| | | ||||||| | | | || ||||| || Sbjct 106499 ACAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAGATTATAA 106558 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||| || | |||||||| Sbjct 106559 CATTCAAAAGGAAAGTACATTACATTTAGT 106588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445019857815360