Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq78 138 1e-27 >seq78 Length=312069 Score = 138 bits (152), Expect = 1e-27 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||| ||||| || | || || || || || || || ||||| |||||||| || | Sbjct 172488 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAG 172429 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| | || | || || ||||| ||||| ||||| || | ||||||||||||||| Sbjct 172428 ACAAAG-TGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGT 172370 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTC 134662 || || ||||| || |||||||| || ||| || | | ||||| | ||||| | || Sbjct 172369 GGAATTCCTTCCTTGTCTTGAATCTTGGCTTTTAC-GTTTTCAATGGTATCGGAAGGCTC 172311 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || ||||||||||| || ||||| ||||| || || || ||||||||| Sbjct 172310 AACTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 172259 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| ||||| || | || || || || || ||||||||||| |||||||| ||| Sbjct 172716 TTCCTCCCCTGAGGCGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGG 172657 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || | ||| || || ||||| || | ||||||||||||||| | Sbjct 172656 AAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTG 172597 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| ||||| ||||| ||| || || | ||||| || | || | Sbjct 172596 GGATTCCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAA 172537 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| || ||||| | || || |||||||| |||||| Sbjct 172536 CTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172487 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| ||||| || | || || || || || || ||||| ||||||||||||||| Sbjct 172032 TTCCTCCCCTGAGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 171973 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || || || ||||| || || || | ||||||||| || || | Sbjct 171972 AAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTG 171913 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| || | |||||| || | || | Sbjct 171912 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAA 171853 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || || || ||||| || ||||| | ||||| ||||| |||||||| || Sbjct 171852 CTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCATCTT 171801 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||||||| || | || || || || |||||||| || || |||||||| || | Sbjct 172260 TTCCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAG 172201 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| ||| | || || ||||| || || ||||| || | ||||||||| ||||| Sbjct 172200 ACAA-AGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGT 172142 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || || || || || ||||| || | ||||| || | || Sbjct 172141 GGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCA 172082 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || ||||| ||||| || ||||| | || || ||||| ||||||||| Sbjct 172081 ACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || || || || | || || || || || || |||||||||||||||||||| | | Sbjct 172942 CCACCCCTCAGGCGGAGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGAC 172883 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || || | || || | ||| || || ||||| || | |||||| ||||| || || Sbjct 172882 AA-AGTACGGCCATCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGG 172824 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || ||||| || | || || || | || || Sbjct 172823 GATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAAC 172764 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||| || ||||| | || || |||||||| |||||| Sbjct 172763 TTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505313758402960