Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq89 100 2e-16 seq78 95.1 1e-14 >seq89 Length=276290 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| ||||| |||||| ||||||||||| || || || | | || | ||||| Sbjct 106361 TACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTC 106302 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||| |||| || | ||||| | ||||||||| || || | || |||||||| Sbjct 106301 CAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTG 106242 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||| | | || | ||| || | | ||||||||| ||||| || | ||| Sbjct 106241 TATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTT 106182 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| ||||| |||||||| Sbjct 106181 ACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| |||||||| ||| || |||||||| || || || | | || | ||||| Sbjct 106589 TACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTC 106530 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||| || | ||||| | ||||||||| || || | || |||||||| Sbjct 106529 CAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTG 106470 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||| | | || | ||| || | | ||||||||| ||||| || | ||| Sbjct 106469 TATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTT 106410 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| ||||| |||||||| Sbjct 106409 ACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 >seq78 Length=312069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| || ||||| || || |||| | ||||| ||||| || || Sbjct 172456 GTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCTTCAAGCTGCTTGCCA 172397 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| ||||| || || | || || || || |||||| ||| Sbjct 172396 GCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTT 172337 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | || || | | |||||||| ||||| || | || || |||| ||| Sbjct 172336 ACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTCTTTCCGGTCAAAGTC 172277 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 172276 TTGACAAAGATTTGCAT 172260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424865013258576