Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq89 104 1e-17 seq78 104 1e-17 >seq89 Length=276290 Score = 104 bits (114), Expect = 1e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||| | || ||||| | ||| || || |||||||||||||||||||| Sbjct 106151 GCCACCTCTAAGACGAAGTACTAAATGTAAAGTACTTTCATTTTGAATGTTATAATCTGA 106092 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | | ||| | ||||||||| ||||||| | | |||||| || || || Sbjct 106091 GAGTGTACGACCATTTTCCAATTGTTTACCAACAAATATCAGTCTCTGTTGATCAGGTGG 106032 Query 34599 CACTCCCTCCTTGTC 34613 | ||| || ||||| Sbjct 106031 GATTCCTTCTTTGTC 106017 Score = 102 bits (112), Expect = 5e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| | || || ||||||||||||||||||||||| ||||| || | ||||| Sbjct 106588 ACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCC 106529 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGT 34616 | | |||||| |||||||| | | |||||| || || || | ||| || || | |||| Sbjct 106528 AATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGT 106469 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| |||| |||||| | ||| || || || ||||| | || || |||| Sbjct 106468 -ATC-TTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTT 106411 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || | ||||| ||||| || |||||| Sbjct 106410 TACCAGTCAGAGTTTTTACAAATATTTGCATG 106379 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| | |||| | || ||||| | || || || |||||||||||||||||||| Sbjct 106379 GCCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGA 106320 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | ||||| | |||| |||| |||||||| | | |||||| || || || Sbjct 106319 GAGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGG 106260 Query 34599 CACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | ||| || || | |||| ||| |||| ||||| | || || || || Sbjct 106259 GATTCCTTCTTTATCCTGT-ATC-TTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCA 106202 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | || || |||||||| || | ||||| ||||| || |||||| Sbjct 106201 ACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCATG 106151 >seq78 Length=312069 Score = 104 bits (114), Expect = 1e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||| || || ||||| || || | ||||||||||| || || || || Sbjct 171995 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAA 171936 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | |||||| ||||| || || | ||| ||||||||| |||| || | || ||| Sbjct 171935 GATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATC-TTGGCCTTGACGT 171877 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | |||||||| ||| ||||| | ||| || || || ||||| | ||||||| Sbjct 171876 TCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCA 171817 Query 34694 CAAAAATCTGCATGTT 34709 | || || ||||| || Sbjct 171816 CGAAGATTTGCATCTT 171801 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | || | |||||| || |||||||| ||||| ||||| ||| Sbjct 172714 CCTCCCCTGAGGCGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 172655 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || |||||||| || | |||||| || || || || Sbjct 172654 AGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGG 172595 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| ||| | |||||| | ||| ||||| ||| || Sbjct 172594 ATTCCTTCTTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAAC 172536 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || ||||| | || || || ||||||||||| Sbjct 172535 TTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCAT 172488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314678208393734