Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq78 172 1e-37 seq85 159 8e-34 seq89 114 3e-20 seq431 93.3 1e-13 >seq78 Length=312069 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||||||||||||||| ||||| | | || | |||||| Sbjct 172471 AGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCT 172412 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || |||||||| || || || || || |||| |||||||||||| Sbjct 172411 TCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCT 172352 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| |||||||| ||||| || || ||||| || ||||| || ||| Sbjct 172351 TGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTC 172292 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || | |||||| ||||| | |||||| Sbjct 172291 TTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 172259 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| ||||| ||||| || || | | || | |||||| Sbjct 172927 AGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 172868 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || |||||||| || ||||| ||||| || | ||||||||||||| Sbjct 172867 TCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCC 172808 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| ||||| ||||| || |||||||| ||| Sbjct 172807 TGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTC 172748 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || |||||||| || | ||||||| Sbjct 172747 TTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172715 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| || || ||||| || || | ||| || | |||||| Sbjct 172015 AGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCT 171956 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||||||||| || || |||||||| || | |||||||||||| Sbjct 171955 TCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCT 171896 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 171895 TGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTC 171836 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 ||||| || || || || || || | ||||| || || Sbjct 171835 TTTCCGGTAAGTGTTTTCACGAAGATTTGCATCTTTTG 171798 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| ||||| |||||||| ||||| | | || | |||||| Sbjct 172243 AGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGGCCATCT 172184 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| || || ||||| || || | ||||||||||||| Sbjct 172183 TCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATTCCTTCCTTGTCC 172124 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || |||||||| ||||| || |||||||| ||| Sbjct 172123 TGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTC 172064 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || ||||| || || | |||||| Sbjct 172063 TTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || || ||||||||||| ||||| | ||| || | |||||| Sbjct 172699 AGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCT 172640 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || |||||||| || || || || || || | |||||| ||||| Sbjct 172639 TCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCT 172580 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || ||||| || |||||||| ||||| || |||||||| ||| Sbjct 172579 TGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTC 172520 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || |||||||| || | ||||||| Sbjct 172519 TTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172487 >seq85 Length=280044 Score = 159 bits (176), Expect = 8e-34 Identities = 151/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||||||||| | ||||| | ||||| |||| ||| || || || |||| Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || || ||||||||||| | |||||||||||||||||||| || || |||| Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | ||||| ||||| || ||||| || ||||| ||||| || ||||||||||| |||| Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 211105 ACACCTGCATTTT 211117 | | |||||| || Sbjct 114434 AAATCTGCATCTT 114422 >seq89 Length=276290 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 |||||||| ||||||||||| | || || | |||||||||| || | || || || Sbjct 106342 TCTTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCCAATTGTCTACCAGCAAAT 106283 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || | ||||| ||||| || | |||||| || ||||| |||||| ||| | || Sbjct 106282 ATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTC 106223 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || || || ||||| |||||| || ||||| || || || || || ||||| |||||| Sbjct 106222 TCCATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACA 106163 Query 211104 AACACCTGCAT 211114 || | ||||| Sbjct 106162 AATATTTGCAT 106152 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 || ||||| ||||||||||| | || || | |||||||||| || || || || Sbjct 106570 TCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATCTTCCAATATTTTACCAGCAAAT 106511 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || | ||||| ||||| || | |||||| || ||||| |||||| ||| || || Sbjct 106510 ATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACATTC 106451 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || || || ||||| |||||| || ||||| || || || || || ||||| |||||| Sbjct 106450 TCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACA 106391 Query 211104 AACACCTGCAT 211114 || | ||||| Sbjct 106390 AATATTTGCAT 106380 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 210933 ATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGT 210992 ||||||||||| | || || | ||||| ||| || || || || || || | Sbjct 107986 ATGTTATAATCTGAGAGTGTACGATCATCTACCAATACTTTACCAGCAAATATGAGTCTC 107927 Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 ||||| ||||| || | |||||| || ||||| |||||| ||| || || || || || Sbjct 107926 TGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACATTCTCAATAGTA 107867 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 ||||| |||||| || ||||| || || | || || ||||| |||||||| | ||| Sbjct 107866 TCAGAAGGTTCAACTTCAAGAGTAATTGTTCTACCAGTCAGAGTTTTTACAAATATTTGC 107807 Query 211113 AT 211114 || Sbjct 107806 AT 107805 >seq431 Length=85469 Score = 93.3 bits (102), Expect = 1e-13 Identities = 124/172 (72%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 210928 TTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAA 210987 |||| ||||||||||| | || || | |||||||| | || || || || || || | Sbjct 84425 TTTGAATGTTATAATCTGAGAGTGTGCAACCATCTTCTAATTGTTTACCAGCAAATATGA 84366 Query 210988 GGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGA 211047 | | ||||| ||||| || | |||| | | ||||| |||||| ||| || ||||| | Sbjct 84365 GTCTCTGTTGATCAGGTGGGATTCCTACTTCATCCTGTATCTTTGCTTTAACATTTTCAA 84306 Query 211048 TGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 | || |||||||| |||||| || ||||| || | || || || ||||| Sbjct 84305 TAGTATCAGAGCTAGGTTCAACTTCAAGAGTAATTCTTTTACCAGTCAGAGT 84254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158953017794270