Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq78 87.8 2e-12 >seq78 Length=312069 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | || | ||| || || ||| || || || || || |||| | Sbjct 172030 CCTCCCCTGAGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAA 171971 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || ||||| || ||||| || || ||||||||||||||||| |||||| Sbjct 171970 AGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGG 171911 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | || ||||| ||| || |||| || | | || || | ||| || Sbjct 171910 -ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAAC 171852 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | ||||| | ||||| || || ||||| || ||||||||||||||| Sbjct 171851 TTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCATCTTT 171800 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | ||| | || | ||| || ||| ||||| || || || ||||| | Sbjct 172258 CCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 172199 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || | || |||||||| || || ||||| ||||||||||||||||||| || Sbjct 172198 AAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGG 172139 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| ||| || |||| || | | || || | ||| || Sbjct 172138 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACT 172079 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | ||||| || || || || || ||||||||||| Sbjct 172078 TCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429475460304374