Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq78 141 6e-29 seq89 105 5e-18 >seq78 Length=312069 Score = 141 bits (156), Expect = 6e-29 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || ||||| || |||||||| |||||||| | | Sbjct 172487 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172546 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| ||| |||| ||||| | ||||| ||||||||||| | || || |||| Sbjct 172547 TGACACTATTGAAAATGTTAAAGC-TAAAATCCAAGACAAAGAAGGAATCCCACCCGATC 172605 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || |||||||| || || ||||||| | || ||| | |||||||| Sbjct 172606 AGCAGCGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACA 172665 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| ||||| || || ||| | ||| | ||| Sbjct 172666 ACATCCAAAAGGAATCTACACTCCATCTTGTT 172697 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || ||||| || || ||||| |||||||| | | Sbjct 172259 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAAGTTGAGCCTTC 172318 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| ||||| || ||| ||||| ||||| | || || ||||| Sbjct 172319 CGATACCATTGAAAACGTAAAAGCCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCA 172378 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || ||||| | |||||||| |||||||| Sbjct 172379 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAA 172438 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||||||||| ||| | ||| | ||| Sbjct 172439 CATCCAAAAAGAGTCTACACTTCATCTTGTT 172469 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || || || ||||| || |||||||| |||||||| | | Sbjct 172031 AATGCAAATCTTCGTGAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172090 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| ||||| | || || || || Sbjct 172091 TGACACTATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 172150 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || || ||||| | |||||||| |||||||| Sbjct 172151 GCAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAA 172210 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| |||||| | ||| | ||| | | | |||||||| Sbjct 172211 CATCCAGAAAGAATCCACACTCCATCTTGTTCTCCGCCTCAGAGGAGGA 172259 Score = 114 bits (126), Expect = 9e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || ||||| || |||||||| |||||||| | | Sbjct 172715 AATGCAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTC 172774 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | || | || | | ||||| ||||| | || || |||| Sbjct 172775 TGATACCATTGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAAGGAATCCCACCTGATC 172833 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| | || ||||| || || || ||||||| | || ||||| || |||| Sbjct 172834 AACAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACA 172893 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| ||||| ||||| ||| | ||| | ||| Sbjct 172894 ACATTCAAAAGGAGTCTACACTTCATCTTGTT 172925 >seq89 Length=276290 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| || || || ||||| || ||||| |||||||| | | Sbjct 106380 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106439 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| ||||| |||| | | || |||||||| | || || ||||| Sbjct 106440 GATACTATTGAGAATGTTAAAGCAAAGA-TACAGGATAAAGAAGGAATCCCACCTGATCA 106498 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | |||||||| || ||| | ||||||| | || || | ||||| || Sbjct 106499 ACAGAGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAGATTATAA 106558 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| || |||||||||||||| Sbjct 106559 CATTCAAAAGGAAAGTACATTACATTTAGT 106588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337954407046184