Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq78 150 4e-31 seq85 109 1e-18 seq13398 93.3 1e-13 seq409 86.0 1e-11 >seq78 Length=312069 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| ||||||||||| |||| |||||||| | |||||| | |||||| Sbjct 172243 AGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGGCCATCT 172184 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || |||||||| || || |||||||| || || ||||||||||| Sbjct 172183 TCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATTCCTTCCTTGTCC 172124 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || ||||| || | || || || | ||||| ||| Sbjct 172123 TGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTC 172064 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || || | ||| | ||||||| Sbjct 172063 TTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || |||||||||| |||||||| | |||||| | |||||| Sbjct 172471 AGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGGCCATCT 172412 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| |||||||| || || || ||||| ||||| |||||||||||| Sbjct 172411 TCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCCTTGTCT 172352 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||| ||||| || || | || || || | || || ||| Sbjct 172351 TGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTAATGGTC 172292 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||||||| || | || | ||||||| Sbjct 172291 TTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 172259 Score = 136 bits (150), Expect = 9e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| || ||||| ||||||| |||||||||| | ||| | |||||| Sbjct 172699 AGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCT 172640 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || || |||||||| || || || ||||| || || ||||| |||||| Sbjct 172639 TCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCT 172580 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| ||| || ||||| || | || || || | ||||| || Sbjct 172579 TGGAT-TTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGT 172521 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | || |||| ||| | |||||| Sbjct 172520 CTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172487 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || || || || | ||||| |||| | ||| | |||||| Sbjct 172015 AGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCT 171956 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| |||||||||||||| || || ||||| || || || |||||||||||| Sbjct 171955 TCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCT 171896 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || | ||||| ||| Sbjct 171895 TGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTGATGGTC 171836 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 || || || | ||||| | ||| | |||||| || || Sbjct 171835 TTTCCGGTAAGTGTTTTCACGAAGATTTGCATCTTTTG 171798 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || || ||||| | ||||| || | |||||| | |||||| Sbjct 172927 AGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 172868 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| |||||||| || ||||| || || || || ||||||||||| Sbjct 172867 TCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCC 172808 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || ||||| || || | || || || | ||||| ||| Sbjct 172807 TGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCAAGAGTGATGGTC 172748 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || |||| ||| | |||||| Sbjct 172747 TTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172715 >seq85 Length=280044 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| || ||||| | | |||| ||||| || | ||| || ||||| |||| Sbjct 114614 CTTTCTGGATGTTATAATCAGAGAGGGTTCGACCATCCTCCAACTGTTTACCAGCAAAGA 114555 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | ||||| || ||||| || || || ||||||||||| |||||||| ||| ||| || Sbjct 114554 TGAGTCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 114495 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | ||||| || || | || || |||| |||||| ||||| || || | ||| || | | Sbjct 114494 CTATGGTATCAGAAGGCTCGACCTCTAGCGTGATGGTCTTCCCAGTGAGAGTCTTGACAA 114435 Query 225704 ACACTTGCATTTT 225716 | | ||||| || Sbjct 114434 AAATCTGCATCTT 114422 >seq13398 Length=19960 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || ||||| ||||||||||| |||||||||||||| | || || || || || || | | Sbjct 4036 TCCGGATGCCCAAAAAATCAAAATAAATGTTGATATAATATCGGGTCCCCACCTCCAGCT 3977 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||||||| ||||||| ||||| ||||| || || |||| Sbjct 3976 GGATCAAAAAATGTAGTATTGAAATTCCTATCTGTCAATAACA 3934 >seq409 Length=91958 Score = 86.0 bits (94), Expect = 1e-11 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 370676 GGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGA 370735 ||||| || |||||||| |||||||||||||| | || || || || || || | |||| Sbjct 6080 GGATGCCCGAAAAATCAAAATAAATGTTGATATAATATCGGGTCCCCACCTCCCGCTGGA 6139 Query 370736 TCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGTT 370777 |||||||| ||||||| ||||| ||||| | | | |||||| Sbjct 6140 TCAAAAAATGTAGTATTGAAATTCCTATCTG-TCATACAGTT 6180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192326487858212