Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq97 143 4e-29 seq576 87.8 3e-12 >seq97 Length=262405 Score = 143 bits (158), Expect = 4e-29 Identities = 204/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 ||||| ||||| ||||| | |||||| || ||||| ||| |||| |||| |||||| | Sbjct 93739 TTATTCCCTCCTTGATCAACATATCTTGCTGTGTTGTTAAAAACCCTCAGCATTGGTACC 93680 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 | ||| ||||| || ||||| || |||| ||||||||| ||| | | || || || | Sbjct 93679 AGGCCATTAGAAGTGCCATTGGTGCCAGCAATATAACTACCAGACGATCGTATCTTGTGA 93620 Query 76868 ATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCA 76927 | || ||| || || || || || | || || || ||||| | ||||| || ||| Sbjct 93619 ACAGCTAGACCAATACCCCCGGCACTCTTTGATATATTGGCACATCTCTTCAAGGTATCA 93560 Query 76928 TAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 76987 || || |||||||| || || ||| | || || |||||| || | ||| || Sbjct 93559 TATATACCCTCTATGGAGTCGTCGGCCATTGTGAGGAGGAAACAGGAGGAGAGCTGAGGA 93500 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 || ||| || | ||| |||||||| || || |||||||||||||| Sbjct 93499 CGACAAGTACCAGAATTGAACAATGTCGGTGAAGCATGAGTGAACCA 93453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 77347 tttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTC 77406 ||| |||||||| ||||| || ||||| || || || | |||||| ||||| |||||||| Sbjct 89985 TTTCTTTGTTTCTTTGTGAAGGTTCGACACAGCAATACGAGCAGCAAGAATAGCATAGTC 89926 Query 77407 AGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGT 77466 |||||| | ||| || | ||| || | ||||| || | ||| || | |||| ||| Sbjct 89925 AGGATGCTTTGTGGTCATAGAGGCGGCCGTCTCTGCTGCAAGAGTGTCCAGTTCTGAAGT 89866 Query 77467 AGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||| || || ||| | || | ||| || ||||||| Sbjct 89865 AGTCACACCAGCATACACGCCATTAATGACCTTCATGG 89828 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||||||||||||||| |||| | ||||||||||||| |||||||||| |||| Sbjct 95040 TCAAATTCATCTCCCCATGTCTCATAGAGGCCAGGACATTCATCAGGACACATCAGTGAC 94981 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 76633 ||| |||||| || ||||| |||| || |||||||| |||| || ||| Sbjct 94980 CACATACCATCAGACTCAACCCTCCTCATGAATAGATCAGGAGTCCAAAGGGCA 94927 >seq576 Length=57293 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/150 (74%), Gaps = 7/150 (5%) Strand=Plus/Minus Query 46705 CGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCC 46764 || || |||||||| ||||| || || ||||| || || |||||||| || || ||||| Sbjct 19094 CGTTTCTTGAGCCAGAATATTGCTGCAAAAGAGCCGGAGAAGAATATTCCCTCAACAGCT 19035 Query 46765 GCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA---TGAATCCACCTTTGA--G 46819 || || || | | |||||| || || |||| | | |||||||| |||| | Sbjct 19034 GCAAAAGCAATGACTCTCTCGCCAAAAGAATCATCCTCAGACTGAATCCAA--TTGATGG 18977 Query 46820 CCCAATCAGCCTTTTTCTTTACACAAGGCA 46849 |||||||||| || ||||| |||||||||| Sbjct 18976 CCCAATCAGCTTTCTTCTTAACACAAGGCA 18947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712815001311360