Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq89 91.5 1e-13 seq523 86.0 5e-12 >seq89 Length=276290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| |||| || ||||| ||||| | ||| ||||| Sbjct 106152 ATGCAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCT 106211 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | | ||| ||| || || |||||||| | || |||||| Sbjct 106212 GATACTATGGAGAATATTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAA 106271 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || || || || | ||| || | ||||||||||||| || | ||| | | ||||||| Sbjct 106272 CAGAGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCT--CAGATTATA 106329 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 | || ||||||||| ||| | |||||||| | |||| || ||||||| Sbjct 106330 ACATTCAAAAAGAAAGTACGTTGCATTTAGTACTTCGTCGTCGAGGTGGCA 106380 >seq523 Length=66199 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||| |||||| || | | || | |||||| | | ||| || || Sbjct 29044 ATGCAGATTTATGTCAAGACACTATCAGGAATGACCATTCCGCTTGAAGTTGAGCCTTCT 29103 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCC-CGTCGATCA 111218 ||| |||| | | || ||| |||| || ||||||||||| ||| | || |||| Sbjct 29104 GATACTGTATGGCTTGTTAAATTAAAATTTCAAGACAAAGAAGGTACTCCACCTC-ATCA 29162 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 | |||||| |||||||| ||||||||| ||||| || | || | |||||||||| Sbjct 29163 GCTAAGGCTCATTTATGCTGGCAAACAAATGGAAAATGATCGTACCTTATCCGATTATAA 29222 Query 111279 TATACAAAAAGAATCTACA 111297 ||| |||| |||||||||| Sbjct 29223 TATTCAAAGAGAATCTACA 29241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421742323240048