Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq78 165 2e-35 seq89 140 7e-28 seq131 95.1 3e-14 seq90 95.1 3e-14 >seq78 Length=312069 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || || ||||| | ||| |||||| ||||||||||| |||| | |||||| Sbjct 172249 AGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAAGTGCGG 172190 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || ||||||||||| | ||| || ||||| || || || ||| Sbjct 172189 CCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCGGGTGGGATTCCTTCC 172130 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | || |||||||| |||| || ||||| |||||| Sbjct 172129 TTGTCCTGGATCTTAGCCTTGACGTTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTG 172070 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || | ||||| ||||| || |||||| Sbjct 172069 ATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCATT 172031 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || || ||||| | || ||||||||||||||||| |||| | |||||| Sbjct 172477 AGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATCAGACAAAGTGCGG 172418 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || |||||||| | ||| || || || ||||| || ||| Sbjct 172417 CCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGAATTCCTTCC 172358 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||| ||||| ||||||||| | || || || || |||| || ||||| ||||| Sbjct 172357 TTGTCTTGAATCTTGGCTTTTACGTTTTCAATGGTATCGGAAGGCTCAACTTCAAGAGTA 172298 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || ||||||||||| || || || |||||| Sbjct 172297 ATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 172259 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || || ||||| | || ||| |||||||||||||| || | ||| || ||| Sbjct 172705 AGGCGGAGAACAAGATGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGG 172646 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || | || || ||||||||||| | ||| || || || || || || || Sbjct 172645 CCATCTTCCAACTGCTTTCCGGCAAAGATAAGACGCTGCTGATCGGGTGGGATTCCTTCT 172586 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||||||||| || ||||| || | || |||||||| |||| || ||||| |||||| Sbjct 172585 TTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTG 172526 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || | ||||| ||||| ||||||||| Sbjct 172525 ATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172487 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| | |||||| || || ||||| | || || ||||| ||||||||||||| Sbjct 172944 AACCACCCCTCAGGCGGAGAACAAGATGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAG 172885 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | || |||||||| || | || || || |||||||| | ||| ||||| ||| | Sbjct 172884 ACAAAGTACGGCCATCTTCCAACTGCTTTCCAGCAAAGATAAGACGCTGTTGATCAGGTG 172825 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || |||||||| |||||||| || || || | || || || || |||| || | Sbjct 172824 GGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTATCAGAAGGCTCAA 172765 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||| |||||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 172764 CTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAAATCTGCATT 172715 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || || ||||| | || || || || ||||||||||| | ||| || ||| Sbjct 172021 AGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGG 171962 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || ||||| || || || ||||| | ||| || |||||| || || || ||| Sbjct 171961 CCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGGATTCCTTCC 171902 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| || || ||| | ||||| ||||| |||| || ||||| || ||| Sbjct 171901 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCAGAAGGCTCAACTTCAAGGGTG 171842 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| || || | || || ||||| || ||||| || Sbjct 171841 ATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCATCTT 171801 >seq89 Length=276290 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || | |||||||| | ||| ||||| ||||||||||| ||||| || || | Sbjct 106378 CCACCTCGACGACGAAGTACTAAATGCAACGTACTTTCTTTTTGAATGTTATAATCTGAG 106319 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | |||| | || ||||| || | | ||||| ||| || Sbjct 106318 AGTGTACGACCATCTTCCAATTGTCTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGG 106259 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || || ||||||||||| | | || ||||| || |||| ||| ||| Sbjct 106258 ATTCCTTCTTTATCCTGTATCTTTGCTTTAATATTCTCCATAGTATCAGAAGGTTCAACT 106199 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| |||| ||| || || ||||| ||||| Sbjct 106198 TCAAGAGTAATTGTTTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106152 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 282887 AAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATC 282946 |||||| | |||||| || ||||| ||||| ||||| || || | || || || ||||| Sbjct 106592 AAGTACTAAATGTAATGTACTTTCCTTTTGAATGTTATAATCTGAGAGTGTACGACCATC 106533 Query 282947 CTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTC 283006 || | | ||| || ||||| || | | ||||| ||| || || || || || || Sbjct 106532 TTCCAATATTTTACCAGCAAATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATC 106473 Query 283007 TTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGT 283066 || ||||||||||| || | || ||||| || |||| ||| ||||| ||||| || || Sbjct 106472 CTGTATCTTTGCTTTAACATTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGT 106413 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| |||| ||| || || ||||| ||||| Sbjct 106412 TTTACCAGTCAGAGTTTTTACAAATATTTGCAT 106380 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 282906 CTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCA 282965 |||| |||| ||||| || || | || || || |||| | | | ||| || ||| Sbjct 107996 CTTTGTTTTA--ATGTTATAATCTGAGAGTGTACGATCATCTACCAATACTTTACCAGCA 107939 Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 || || | | ||||| ||| || || || || || || || ||||||||||| || Sbjct 107938 AATATGAGTCTCTGTTGATCAGGTGGGATTCCTTCTTTATCCTGTATCTTTGCTTTAACA 107879 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | || ||||| || |||| ||| ||||| ||||| || || |||| |||| ||| || Sbjct 107878 TTCTCAATAGTATCAGAAGGTTCAACTTCAAGAGTAATTGTTCTACCAGTCAGAGTTTTT 107819 Query 283086 ACGAATATCTGCAT 283099 || ||||| ||||| Sbjct 107818 ACAAATATTTGCAT 107805 >seq131 Length=226272 Score = 95.1 bits (104), Expect = 3e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||| |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||| Sbjct 148529 CGAAGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCC 148588 Query 168809 CGATTCG 168815 || |||| Sbjct 148589 CGCTTCG 148595 Score = 95.1 bits (104), Expect = 3e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||| |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||| Sbjct 149925 CGAAGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCC 149984 Query 168809 CGATTCG 168815 || |||| Sbjct 149985 CGCTTCG 149991 >seq90 Length=274721 Score = 95.1 bits (104), Expect = 3e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||| |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||| Sbjct 272169 CGAAGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCC 272228 Query 168809 CGATTCG 168815 || |||| Sbjct 272229 CGCTTCG 272235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046559514786292