Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq78 114 9e-21 seq45 87.8 1e-12 >seq78 Length=312069 Score = 114 bits (126), Expect = 9e-21 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | || || || || ||| || || ||||||||||| Sbjct 172265 TTGCATTCCTCCTCTGAGGCGGAGAACAAGATGGAGTGTGGATTCTTTCTGGATGTTGTA 172206 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | ||| | || || |||||||| ||||||||||| | ||||||||| || Sbjct 172205 ATCAGACAAAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTC 172146 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | |||||||| ||| ||||| ||| | |||| | || ||||| | | Sbjct 172145 GGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGAC-GTTCTCAATAGTGTCAGAAG 172087 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || |||||||| || || |||||||||||||||||||| Sbjct 172086 GCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 172032 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || || || | | || || ||||| || ||| ||||||||||||||||| Sbjct 172490 CATTCCTCCCCTGAGGCGGAGAACAAGATGAAGTGTAGACTCTTTTTGGATGTTGTAATC 172431 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | ||| | || || |||||||| || |||||||| | |||||||||||| | Sbjct 172430 AGACAAAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGG 172371 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| |||| | ||| | ||||| |||| | | Sbjct 172370 TGGAATTCCTTCCTTGTCTTGAATCTTG-GCTTTTACGTTTTCAATGGTATCGGAAGGCT 172312 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 172311 CAACTTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 172260 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||||||||||| || || | || |||| |||||| ||||||||| Sbjct 172678 TCCTTTTGGATGTTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTTCCGGCAAAG 172619 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGT 44265 || | |||||||||||| | || | ||||| || || || || |||| || | Sbjct 172618 ATAAGACGCTGCTGATCGGGTGGGATTCCTTCTTTGTCTTGGAT-TTTAGCTTTAACATT 172560 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | || || || | || || |||||||| || || ||||| || Sbjct 172559 TTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTCTTTCCGGTAAGTGTCTTTAC 172500 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 172499 GAAAATCTGCAT 172488 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | | || || ||||| || |||||| || |||||||| Sbjct 172037 TTGCATTCCTCCCCTGAGGCGGAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTA 171978 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || || | || || || ||||| || || ||||| | ||||||||| || Sbjct 171977 GTCGGAAAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTC 171918 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | |||||||| || ||||| ||| | |||| | || ||||| | | Sbjct 171917 AGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATTGTGTCAGAAG 171859 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || |||||||| || || || ||||||||||||||||| Sbjct 171858 GCTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGTGTTTTCACGAAGATTTGCAT 171804 >seq45 Length=404445 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| ||| | || || ||||||||| |||||| || |||||||| || | | Sbjct 20291 CCGCCTCTCAATCTGAGGACAAGATGAAGCGTGGACTCCTTCTGTATGTTGTAGTCAGAG 20350 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| | || || ||||||||||| ||||| ||||| | ||||||||| Sbjct 20351 AGAGTGCGGCCATCTTCAAGCTGCTTCCCAGCAAATATCAACCTCTGCTGATC 20403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359931617842566