Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphimedon_20queenslandica_20[refseq_20GCF_5F000090795.1_202010-05- 28] 13,398 sequences; 166,699,561 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq78 183 7e-41 seq89 116 9e-21 >seq78 Length=312069 Score = 183 bits (202), Expect = 7e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || ||||| || ||||| || || || || || ||| Sbjct 172035 CAAATCTTCGTGAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCTGAC 172094 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 172095 ACTATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAGCAG 172154 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| |||||||| ||||| |||||||| | ||| | | ||||| ||| || Sbjct 172155 CGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTTTGTCTGATTACAACATC 172214 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| ||||| ||||||||| | | |||||| Sbjct 172215 CAGAAAGAATCCACACTCCATCTTGTTCTCCGCCTCAGA 172253 Score = 174 bits (192), Expect = 4e-38 Identities = 174/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 ||| | | ||||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 171799 AAAAGATGCAAATCTTCGTGAAAACACTTACCGGAAAGACCATCACCCTTGAAGTTGAGC 171858 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 || ||||| |||||||||||||| ||||| || ||||| ||||||||||| || | Sbjct 171859 CTTCTGACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCTG 171918 Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 ||||||| || ||||||||||| || || || || |||||||| | |||||| |||| | Sbjct 171919 ACCAGCAGCGTCTTATCTTCGCTGGCAAGCAACTTGAAGATGGCCGTACTCTTTCCGACT 171978 Query 178096 ATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | ||| | || || || || || || ||||||||| | | ||||| Sbjct 171979 ACAACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTCCGCCTCAG 172024 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| || ||||| || || || || || ||| Sbjct 172491 CAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCTGAC 172550 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||||||||| || || ||||| Sbjct 172551 ACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAGCAG 172610 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| |||||||| ||| | |||||||| | |||||| ||||||| ||| || Sbjct 172611 CGTCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAACATC 172670 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| ||||| ||||| ||||||||| | | ||||| Sbjct 172671 CAAAAGGAATCTACACTCCATCTTGTTCTCCGCCTCAG 172708 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| || ||||| || || || || || || Sbjct 172719 CAGATTTTCGTAAAGACACTTACCGGAAAGACCATCACTCTTGAAGTTGAGCCTTCTGAT 172778 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| |||||||| ||||||||||| || || || || Sbjct 172779 ACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCACCTGATCAACAG 172838 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || ||||| ||| | |||||||| | ||| | | || || ||| | Sbjct 172839 CGTCTTATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAACATT 172898 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || ||||| ||||||||| Sbjct 172899 CAAAAGGAGTCTACACTTCATCTTGTT 172925 >seq89 Length=276290 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| || || || || || ||| || || Sbjct 106155 CAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCTGAT 106214 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| | ||| |||||| ||||| |||||||||||||| || || || || Sbjct 106215 ACTATGGAGAATATTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAACAG 106274 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || | ||| | |||||||| | || || | ||||||||| | Sbjct 106275 AGACTCATATTTGCTGGTAGACAATTGGAAGATGGTCGTACACTCTCAGATTATAACATT 106334 Query 178104 CAAAAAGAA 178112 ||||||||| Sbjct 106335 CAAAAAGAA 106343 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| || || || || || ||| || || Sbjct 106383 CAAATATTTGTAAAAACTCTGACTGGTAAAACAATTACTCTTGAAGTTGAACCTTCTGAT 106442 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||| ||||| |||||||||||||| || || || || Sbjct 106443 ACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAACAG 106502 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || ||| | |||||||| | || || | ||||||||| | Sbjct 106503 AGACTCATATTTGCTGGTAAAATATTGGAAGATGGTCGTACACTCTCAGATTATAACATT 106562 Query 178104 CAAAAAGAA 178112 ||||| ||| Sbjct 106563 CAAAAGGAA 106571 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || | ||| || || || || || ||| || || Sbjct 107808 CAAATATTTGTAAAAACTCTGACTGGTAGAACAATTACTCTTGAAGTTGAACCTTCTGAT 107867 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||| ||||| |||||||||||||| || || || || Sbjct 107868 ACTATTGAGAATGTTAAAGCAAAGATACAGGATAAAGAAGGAATCCCACCTGATCAACAG 107927 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 |||| || || || || ||| | | ||||| | || || | ||||||||| Sbjct 107928 AGACTCATATTTGCTGGTAAAGTATTGGTAGATGATCGTACACTCTCAGATTATAAC 107984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203524565245212