Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq156 123 2e-23 >seq156 Length=1397929 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || |||| || |||||||||| ||| | ||||| || || || ||||||||||| Sbjct 358636 TTACCTCCTCTGAGTCTGAGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCG 358577 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || |||| | | ||||| ||||||||||| ||| | ||||| |||||||| || | Sbjct 358576 GACAAGGTTCTGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGG 358517 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | || || ||||| |||||| |||||| | | | || ||| |||||| Sbjct 358516 GGGATTCCCTCTTTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGACGGCTCC 358457 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || || |||||||| || | || || ||||| || |||||| Sbjct 358456 ACTTCCAATGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAAATCTGCATT 358406 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| ||| | ||||||||| || || ||||| ||||||| | Sbjct 359757 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359698 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||||||||| ||| | || | ||||||||| || || Sbjct 359697 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 359638 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||| || ||||| | | | || || |||||| | Sbjct 359637 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 359578 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| ||||| || | || |||||||| || ||||| Sbjct 359577 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 359531 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| ||| | ||||||||| || || ||||| ||||||| | Sbjct 359985 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359926 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||||||||| ||| | ||||| | ||||| || ||| Sbjct 359925 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 359866 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||| || ||||| | | | || ||| |||||| | Sbjct 359865 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 359806 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| ||||| || | || ||||| || || ||||| Sbjct 359805 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359759 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| ||| | ||||||||| || || ||||| ||||||| | Sbjct 360441 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360382 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||||||||| ||| | ||||| | ||||| || ||| Sbjct 360381 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360322 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||| || ||||| | | | || || |||||| | Sbjct 360321 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360262 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| ||||| || | || ||||| || || ||||| Sbjct 360261 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360215 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| ||| | ||||||||| || || ||||| ||||||| | Sbjct 360669 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360610 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||||||||| ||| | || | ||||||||| || || Sbjct 360609 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 360550 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||| || ||||| | | | || ||| |||||| | Sbjct 360549 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 360490 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| ||||| || | || ||||| || || ||||| Sbjct 360489 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360443 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || ||||| | | || | ||| | || ||||| || || ||||| ||||| Sbjct 360900 TTTCCACCACGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCG 360841 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || ||| || | || || ||||||||||| ||| | ||||| | ||||| || | Sbjct 360840 GACAAGGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGG 360781 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | || || ||||| ||| || ||||| | | | || || |||||| Sbjct 360780 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCC 360721 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || ||||| ||||| || | || |||||||| || ||||| Sbjct 360720 ACTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 360671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422236906297712