Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq156 134 1e-26 seq284 104 2e-17 >seq156 Length=1397929 Score = 134 bits (148), Expect = 1e-26 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || |||||||||||||| | || || | ||||| | Sbjct 360671 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGT-GGAGCCATC 360729 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||||||||| || ||| | || | Sbjct 360730 GGACACCATTGAGAACG-TGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATC 360788 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| || ||||||||||| || || | || ||| | |||||||| Sbjct 360789 AGCAACGTCTTATCTTTGCCGGCAAACAGCTTGAAGATGGCCGTACCTTGTCCGACTACA 360848 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||| ||| | || || |||||||| ||||| Sbjct 360849 ACATCCAGAAAGAGTCAACCCTTCATCTAGTCTTGCG 360885 Score = 132 bits (146), Expect = 5e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || |||||||||||||| | || || | ||||| | Sbjct 359759 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGT-GGAGCCATC 359817 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||||||||| || ||| | || | Sbjct 359818 TGACACCATTGAGAACG-TGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATC 359876 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| || ||||||||||| || || | || ||| | ||||||| Sbjct 359877 AGCAACGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACA 359936 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| || ||| | ||| |||| |||| || || Sbjct 359937 ACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGG 359985 Score = 132 bits (146), Expect = 5e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || |||||||||||||| | || || | ||||| | Sbjct 360215 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGT-GGAGCCATC 360273 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||||||||| || ||| | || | Sbjct 360274 GGACACCATTGAGAACG-TGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATC 360332 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| || ||||||||||| || || | || ||| | ||||||| Sbjct 360333 AGCAACGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACA 360392 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| || ||| | ||| |||| |||| || || Sbjct 360393 ACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGG 360441 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || |||||||||||||| | || || | ||||| | Sbjct 359987 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGT-GGAGCCATC 360045 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||||||||| || || | || | Sbjct 360046 GGACACCATTGAGAACG-TGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCCGATC 360104 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||||||| |||| || | || ||| | ||||||| Sbjct 360105 AGCAGAGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGTACCTTGTCGGACTACA 360164 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| || ||| | ||| |||| |||| || || Sbjct 360165 ACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGG 360213 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || |||||||||||||| | || || | ||||| | Sbjct 360443 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGT-GGAGCCATC 360501 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||||||||| || || | || | Sbjct 360502 TGACACCATTGAGAACG-TGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATC 360560 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||||||||| || || | || ||| | ||||||| Sbjct 360561 AGCAGAGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACA 360620 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| || ||| | ||| |||| |||| || || Sbjct 360621 ACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGG 360669 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || |||||||||||||| | || || | ||||| | Sbjct 359531 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGT-GGAGCCATC 359589 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||||||||| || || | || | Sbjct 359590 GGACACCATTGAGAACG-TGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATC 359648 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||||||||| || || | || ||| | ||||||| Sbjct 359649 AGCAGAGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACA 359708 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| || ||| | ||| |||| |||| || || Sbjct 359709 ACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGG 359757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | Sbjct 357714 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAGCCGTCT 357773 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | || | ||| || | ||||||||||| ||||| | || || Sbjct 357774 GACACAATTGAAAACG-TGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCGCCCGATCA 357832 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | ||| || || ||| |||| || | ||||| ||| || ||||| Sbjct 357833 GCAGAGGTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGACGCACACTCTCAGATTACAA 357892 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || |||| || || || ||| || | | ||||| || Sbjct 357893 TATCCAGAAAGAATCCACACTTCACCTGGTGCTGAGACTTAGGGGAGG 357940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| ||||| || ||||| | || || || | | Sbjct 358406 AATGCAGATTTTTGTGAAGACCCTCACAGGCAAGACTATCACATTGGAAGTGGAGCCGTC 358465 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | || | || || | ||||||||||| |||||| | || || Sbjct 358466 TGACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAAGAGGGAATCCCCCCAGATCA 358525 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||||||||| || || | | ||| | |||||| || Sbjct 358526 GCAGAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCAGAACCTTGTCCGACTATAA 358585 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||| || |||| || ||| | ||| Sbjct 358586 CATCCAGAAAGAATCCACACTCCATTTGGTG 358616 >seq284 Length=917541 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| |||||||||||||| ||||||| |||| ||| ||||| || ||||| | | Sbjct 768795 TGTTCAACGCCATCGAGACCTTGCCGTGTGTCAGAGAAAAGGCAGACTGGGCTATCAAGT 768854 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||||| | || ||| || ||||| | || || || || || || || | Sbjct 768855 GGATCGGTGATGATTCTTCCCCCTACGCTGAGCGTGTTGTTGCTTTTGCTGCTGTTGAAG 768914 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| || ||| ||||| || || || ||| | ||||| | || |||||| Sbjct 768915 GCATCTTCTTCTCTGGCTCCTTCGCTGCAATCTTCTGGTTGAAGAAGAGGGGAATCATGC 768974 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | || || || ||||| || ||||||||| | | ||||||| Sbjct 768975 CTGGTCTCACATTCAGTAATGAGCTCATCAGCCGAGACGAGG 769016 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || |||||| | | || ||| | ||||| || | || | || || |||| |||||| Sbjct 766905 GACAACCCCAGGAGATTTGTGGTCTTCCCAATTGAGTATCATGATATCTGGCAAATGTAC 766964 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || || ||||| || || ||||| | ||||| || ||| |||| |||||| | || Sbjct 766965 AAGAAAGCAGAGGCCTCTTTTTGGACTGCGGAGGAAGTCGACTTGTCAAAGGAC-CTTGC 767023 Query 116711 G-ACTGGGA-GCGCTTGAACGACA-ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 ||||||| | ||| ||| | || | ||| || ||||| || || ||||||||| Sbjct 767024 TCACTGGGAAGAGCT-GAA-GTCAGAAGAGAAACACTTCATTTCACATGTTCTGGCCTTT 767081 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT-CGAG 116809 || || || ||||| || || ||||| || |||||||| |||| Sbjct 767082 TTTGCTGCTAGCGATGGAATTGTCAATGAAAATCTGGTACGAG 767124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515191300880320