Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq156 118 9e-22 seq170 96.9 3e-15 seq769 87.8 2e-12 >seq156 Length=1397929 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | | ||||| ||||| ||| | ||| || ||||| || || |||||||| | Sbjct 357941 ACCTCCCCTAAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATC--T 357884 Query 118571 CATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | |||| |||| ||| || | ||| ||||||||| | || | | |||||||||||| Sbjct 357883 GAGAGTGTGCGTCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGC 357824 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| ||||| || ||| ||| || | ||| | ||||| | ||| Sbjct 357823 GGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCC 357764 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| | ||| | || ||||| || ||||| || || || ||||||||| Sbjct 357763 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATG 357713 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | | || |||||| |||| || |||||||| || |||||||| || Sbjct 360215 TACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 360156 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | |||||| || || |||| | | |||||||||||||| Sbjct 360155 ACAAGGTACGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAG 360096 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| |||||| ||||| || || | || | |||||||| ||| | Sbjct 360095 GAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCA 360036 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | |||||||| ||||| || || || || |||||||| Sbjct 360035 CTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359987 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | ||| | |||||| |||| ||| || ||||| || ||||| || ||| Sbjct 358635 TACCTCCTCTGAGTCTGAGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCGG 358576 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | |||||| |||||||| || || |||| || | ||||||||| || | Sbjct 358575 ACAAGGTTCTGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGGG 358516 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| ||||| || || ||| || | || | |||||| | ||| | Sbjct 358515 GGATTCCCTCTTTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGACGGCTCCA 358456 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || ||||| || || || || |||||||||||||| Sbjct 358455 CTTCCAATGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAAATCTGCAT 358407 >seq170 Length=1283570 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || || ||||| || || |||||| ||| || ||||| || ||| Sbjct 1121677 GTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 1121736 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTT 118660 || |||| ||||||||||| || || || || || || |||| |||| || || || Sbjct 1121737 GCAAAGATCAGACGCTGCTGGTCAGGGGGGATCCCTTCTTTGTCCTGT-ATCTTGGCCTT 1121795 Query 118661 AACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 || | || | ||||||| || | || ||||| | ||| | || ||||| || || | Sbjct 1121796 CACATTCTCAATAGTGTCCGATGGT-TCCACCTCAAGGGTGATTGTCTTGCCAGTAAGTG 1121854 Query 118720 TTTTTACAAAAATCTGCAT 118738 |||| ||||| |||||||| Sbjct 1121855 TTTTCACAAAGATCTGCAT 1121873 >seq769 Length=365539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||||||| | |||||||| |||||||||||||| || Sbjct 68587 ACCACCACGGAGTCTCAACACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCTGA 68646 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || || |||||| ||||| || ||||| | || | | |||||| || ||||| Sbjct 68647 CAACGTACGACCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGAGG 68706 Query 118631 TATGCC 118636 ||||| Sbjct 68707 AATGCC 68712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433807495381744