Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq156 131 1e-25 seq677 100 3e-16 seq170 100 3e-16 seq88 100 3e-16 >seq156 Length=1397929 Score = 131 bits (144), Expect = 1e-25 Identities = 176/238 (74%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||||| || ||||| || |||||| | || || || ||||| Sbjct 357713 CATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAGCCGTC 357772 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | |||| || ||| || ||| | |||||| || || | |||||||| | Sbjct 357773 TGACACAATTGAAAACGTGAAAGCAAAGA-TCCAGGACAAAGAGGGAATCCCGCCCGATC 357831 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATT 31367 ||||| | | || |||||||| || ||||||||||| | | | ||| | | |||| Sbjct 357832 AGCAGAGGTTGATTTTCGCTGGAAAGCAGTTGGAAGA-TGGACGCACACTCTCA--GATT 357888 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AGAA 31424 | || || || |||||||| || ||||| ||||| || ||||| ||||| ||| |||| Sbjct 357889 ACAATATCCAGAAAGAATCCACACTTCACCTGGTGCTGAGACTTAGGGGAGGTGAGAA 357946 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| |||||||| ||||| | || || || || || Sbjct 359987 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 360046 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||||| || || | || ||||| ||| Sbjct 360047 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCCGATCAG 360106 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||||||||||||||| || || || || ||| Sbjct 360107 CAGAGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGTACCTTGTCGGACTACAAC 360166 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| ||| |||| || | ||||| || |||| Sbjct 360167 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGGTA 360215 >seq677 Length=433858 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 ||||| ||||| | |||||||||| || | ||| | | |||||| || |||||| Sbjct 163997 TCCGGGATCCACATGGCGTAGAACAAATCCCTGGCCCTCTGCTCCTCAGCACCAGTGTTC 163938 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || |||| ||||| || || || | ||| |||||||| ||||| ||||||||||||||| Sbjct 163937 TTCTTCAGGTCCAAGAACTCAAAGATGTCGGCATGCCATGGCTCCAGGTAAACGGCAAAC 163878 Query 23483 GCGCCCGGTCTCT 23495 || || || |||| Sbjct 163877 GCTCCAGGCCTCT 163865 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| ||||| || || || | ||||||||||| || ||||||| || |||| Sbjct 166425 GTGTACTCCACAATCTCTGTGCACAAGTTGCTACACTTGATGGTGCCCAGGTTCTGCTGG 166366 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||| ||||| || || || ||||| | ||||||||| || || ||||| ||| Sbjct 166365 TTGGACTTTCGGTTACAGCTGTCTTTGTACAACATGTACGGAGTTCCTGTCTCCGTCTGT 166306 Query 23183 GACTCGATGATCGCTCGCCACA 23204 ||||| ||||| || ||||| Sbjct 166305 GACTCAATGATGGCGTACCACA 166284 >seq170 Length=1283570 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || ||||| || |||||| | || || ||||| || Sbjct 1121873 ATGCAGATCTTTGTGAAAACACTTACTGGCAAGACAATCACCCTTGAGGTGGAACCATCG 1121814 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| |||||| ||||| | || || |||||| Sbjct 1121813 GACACTATTGAGAATGTGAAGGCCAAGATACAGGACAAAGAAGGGATCCCCCCTGACCAG 1121754 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| ||||||| ||| || || || || Sbjct 1121753 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCAGACTACAAT 1121694 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| || || |||||||| || ||| Sbjct 1121693 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTT 1121661 >seq88 Length=1720321 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 ||||| ||||| | |||||||||| || | ||| | | |||||| || |||||| Sbjct 1607816 TCCGGGATCCACATGGCGTAGAACAAATCCCTGGCCCTCTGCTCCTCAGCACCAGTGTTC 1607875 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || |||| ||||| || || || | ||| |||||||| ||||| ||||||||||||||| Sbjct 1607876 TTCTTCAGGTCCAAGAACTCAAAGATGTCGGCATGCCATGGCTCCAGGTAAACGGCAAAC 1607935 Query 23483 GCGCCCGGTCTCT 23495 || || || |||| Sbjct 1607936 GCTCCAGGCCTCT 1607948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445742261749440