Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq156 105 7e-18 seq170 96.9 3e-15 >seq156 Length=1397929 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| |||| |||| || |||||||| || ||||| || ||| | Sbjct 360897 CCACCACGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAC 360838 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| |||||||| || ||| |||| |||||||||||||| || || Sbjct 360837 AAGGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360778 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | || | ||||| | |||||||| Sbjct 360777 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360718 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || ||||| |||| || || || || || |||||| || Sbjct 360717 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCATACCT 360667 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCT 139619 ||||| || || ||||| || || || ||||| | ||||| || | ||||| | || Sbjct 357917 GTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAGAGTGTGCGTCCA-TCTTCCAACT 357859 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 | || ||||| | |||| | ||||||||||| || || || |||||||| ||| | Sbjct 357858 GCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGGATTCCCTCTTTGTCCTGGATCT 357799 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 || ||| | | ||| | |||||| | ||||||||||||| ||| | |||||||| | Sbjct 357798 TTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACCTCAAGGGTGATGGTCTTGCCAG 357739 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | || || ||||| || ||||| Sbjct 357738 TGAGAGTCTTGACGAAGATCTGCAT 357714 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || || || | || |||||||| || ||||| || || | Sbjct 359985 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359926 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || |||||||| || ||| |||| |||||||||||||| || || Sbjct 359925 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 359866 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | || | ||||| | |||||||| Sbjct 359865 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 359806 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || ||||| |||| || || ||||| || |||||| || Sbjct 359805 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATACCT 359755 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || || || | || |||||||| || ||||| || || | Sbjct 360441 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360382 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || |||||||| || ||| |||| |||||||||||||| || || Sbjct 360381 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360322 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | || | ||||| | |||||||| Sbjct 360321 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360262 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || ||||| |||| || || ||||| || |||||| || Sbjct 360261 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATACCT 360211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || || || | || |||||||| || ||||| || || | Sbjct 360213 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360154 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||| || ||| |||||| | |||||||||||||| Sbjct 360153 AAGGTACGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGA 360094 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | || | ||||| | |||||||| Sbjct 360093 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360034 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || ||||| |||| || || ||||| || |||||| || Sbjct 360033 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATACCT 359983 >seq170 Length=1283570 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || | |||| || |||||||| || || || || || Sbjct 1121646 GCCTCCTCGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 1121705 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || |||||| |||||||||| ||||| || || || Sbjct 1121706 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 1121765 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| || || || | | || | ||||| | || ||||| Sbjct 1121766 GATCCCTTCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTTCCAC 1121825 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | ||||| || || || ||||| Sbjct 1121826 CTCAAGGGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496037138134400