Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq156 105 7e-18 seq170 100 3e-16 >seq156 Length=1397929 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| |||| ||||| || || ||||| || |||||||| ||| | Sbjct 360897 CCACCACGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAC 360838 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || ||||| || ||| |||| |||||||||||||| || || Sbjct 360837 AAGGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360778 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||| || | | || | ||||||| || || ||| Sbjct 360777 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360718 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || ||||| |||| || || || || || |||||| || Sbjct 360717 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCATACCT 360667 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||||| || ||||| | || || ||||| || |||||||| || | Sbjct 360441 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360382 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || ||||| || ||| |||| |||||||||||||| || || Sbjct 360381 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360322 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||| || | | || | ||||||| || || ||| Sbjct 360321 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360262 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || ||||| |||| || || ||||| || |||||| || Sbjct 360261 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATACCT 360211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||||| || ||||| | || || ||||| || |||||||| || | Sbjct 359985 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359926 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || ||||| || ||| |||| |||||||||||||| || || Sbjct 359925 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 359866 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||| || | | || | ||||| | || || ||| Sbjct 359865 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 359806 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || ||||| |||| || || ||||| || |||||| || Sbjct 359805 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATACCT 359755 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||||| || ||||| | || || ||||| || |||||||| || | Sbjct 360213 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360154 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||| || ||| |||||| | |||||||||||||| Sbjct 360153 AAGGTACGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGA 360094 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||| || | | || | ||||||| || || ||| Sbjct 360093 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360034 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || ||||| |||| || || ||||| || |||||| || Sbjct 360033 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATACCT 359983 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTG 143040 |||| ||| |||||||| || || |||||||| | ||||| || | ||||| | || Sbjct 357916 TGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAGAGTGTGCGTCCA-TCTTCCAACTG 357858 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || ||||| | |||| | ||||||||||| || || || |||||||| || || Sbjct 357857 CTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGGATTCCCTCTTTGTCCTGGATCTT 357798 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | ||| | | ||| | ||||| | || || || |||| || | |||||||| || Sbjct 357797 TGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACCTCAAGGGTGATGGTCTTGCCAGT 357738 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | || || ||||| || ||||| Sbjct 357737 GAGAGTCTTGACGAAGATCTGCAT 357714 >seq170 Length=1283570 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||| | || | ||||| || || ||||| || || ||||| || Sbjct 1121646 GCCTCCTCGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 1121705 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || || |||||| |||||||||| ||||| || || || Sbjct 1121706 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 1121765 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| || || || | | || | ||||||| ||||| || Sbjct 1121766 GATCCCTTCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTTCCAC 1121825 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| || | |||||| || || || ||||| Sbjct 1121826 CTCAAGGGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506986945170240