Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq170 163 7e-35 seq156 163 7e-35 seq937 102 2e-16 seq284 96.9 8e-15 >seq170 Length=1283570 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || ||||| | || || |||||||| ||||| ||||| Sbjct 1121644 ATGCCTCCTCGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCT 1121703 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || |||||||| || || | ||| || ||||| Sbjct 1121704 GACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGG 1121763 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || ||||| || | || || ||||| Sbjct 1121764 GGGATCCCTTCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTTCC 1121823 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 1121824 ACCTCAAGGGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || |||||||| ||||| ||||| || ||||| | || || Sbjct 1111803 AAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATC 1111862 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 ||| || || || ||||||||||| || | ||| || ||||| || |||||| Sbjct 1111863 TTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGGGGGATTCCT 1111914 >seq156 Length=1397929 Score = 163 bits (180), Expect = 7e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | ||| | ||| ||||||||||| || |||||||| || Sbjct 358633 CCTCCTCTGAGTCTGAGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCGGAC 358574 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || || || || ||||| || ||||| || |||||||| ||||| || || Sbjct 358573 AAGGTTCTGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGG 358514 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| ||||| ||||| ||||| ||||| ||||| || | ||| || || || || Sbjct 358513 ATTCCCTCTTTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGACGGCTCCACT 358454 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || | ||| |||||||| || || || || || ||||| ||||||||| Sbjct 358453 TCCAATGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAAATCTGCATT 358406 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || || || || || || || | ||| ||||||||||| ||||| || || || Sbjct 357940 CCTCCCCTAAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAG 357881 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || ||||| | || |||||||| ||||| | |||||| ||||| || || Sbjct 357880 AGTGTGCGTCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGG 357821 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| ||||| ||||| ||||||||||| || ||||| | || || || || ||| Sbjct 357820 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACC 357761 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| || || || || || |||||||| Sbjct 357760 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 357714 >seq937 Length=262530 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| |||||||||||||| || |||||||| | ||| || ||||| ||| Sbjct 206376 ATACCTTCTTTGTCCTGAATCTTTGCCTTGACATTTTCAATGGTGTCAGACGGTTCCACC 206317 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| || || ||||| || ||||| |||||||||||| Sbjct 206316 TCAAGGGTGATCGTCTTGCCTGTGAGTGTCTTCACAAAAATCTGCATTTTG 206266 >seq284 Length=917541 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGAT 268732 ||||||||| || | | ||||| ||||||||| | || ||||| || || |||| Sbjct 766890 GAACCGCTTCTAAAAGACAACCCCAGGAGATTTGTGGTCTTCCCAATTGAGTATCATGAT 766949 Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| |||||||| | || | || ||||||||||||| || ||||| || || Sbjct 766950 ATCTGGCAAATGTACAAGAAAGCAGAGGCCTCTTTTTGGACTGCGGAGGAAGTCGACTTG 767009 Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTAT 268852 || | ||| | | ||| || | | || ||||||| | | || || || || Sbjct 767010 TCAAAGGACCTTGCTCACTGGGAAGAGCTGAAGTCAGAAGAGAAACACTTCATTTCACAT 767069 Query 268853 ATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTA 268903 |||| || |||||||| | ||| ||||| || || || |||||||| ||| Sbjct 767070 GTTCTGGCCTTTTTTGCTGCTAGCGATGGAATTGTCAATGAAAATCTGGTA 767120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151334493071056