Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq677 116 7e-21 seq88 116 7e-21 seq284 109 1e-18 >seq677 Length=433858 Score = 116 bits (128), Expect = 7e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 ||||| || || | | ||| |||||| || ||||| | | |||| || || Sbjct 164081 CCCCACACATCAGCCAAGCCTGGGCACTCGTGAGGACACATCAAAGTCCAGTCTCCATTT 164022 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 || | || || ||||||| | ||| |||||||| | ||| | ||| | ||||||| | Sbjct 164021 TCTTCCACTCTGCGCATGAACAAGTCCGGGATCCACATGGCGTAGAACAAATCCCTGGCC 163962 Query 245057 CTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGC 245116 |||||||| || | |||||||||||| |||| ||||| || ||||||| |||| | ||| Sbjct 163961 CTCTGCTCCTCAGCACCAGTGTTCTTCTTCAGGTCCAAGAACTCAAAGATGTCGGCATGC 163902 Query 245117 CAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 || ||||||| ||| || || | || || |||| || Sbjct 163901 CATGGCTCCAGGTAAACGGCAAACGCTCCAGGCCTCT 163865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 |||||||| |||||||| ||||| | ||| || ||||||||||||||||||| ||| || Sbjct 166426 GGTGTACTCCACAATCTCTGTGCACAAGTTGCTACACTTGATGGTGCCCAGGTTCTGCTG 166367 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||||| ||| ||| ||| ||||| | |||| Sbjct 166366 GTTGGACTTTCGGTTACAGCTGTCTTTGTACAACATG 166330 >seq88 Length=1720321 Score = 116 bits (128), Expect = 7e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 ||||| || || | | ||| |||||| || ||||| | | |||| || || Sbjct 1607732 CCCCACACATCAGCCAAGCCTGGGCACTCGTGAGGACACATCAAAGTCCAGTCTCCATTT 1607791 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 || | || || ||||||| | ||| |||||||| | ||| | ||| | ||||||| | Sbjct 1607792 TCTTCCACTCTGCGCATGAACAAGTCCGGGATCCACATGGCGTAGAACAAATCCCTGGCC 1607851 Query 245057 CTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGC 245116 |||||||| || | |||||||||||| |||| ||||| || ||||||| |||| | ||| Sbjct 1607852 CTCTGCTCCTCAGCACCAGTGTTCTTCTTCAGGTCCAAGAACTCAAAGATGTCGGCATGC 1607911 Query 245117 CAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 || ||||||| ||| || || | || || |||| || Sbjct 1607912 CATGGCTCCAGGTAAACGGCAAACGCTCCAGGCCTCT 1607948 >seq284 Length=917541 Score = 109 bits (120), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCA-AGAAGAAGGCGGACTGGGCGCTCAA 42667 |||||||| ||||| ||||| |||| || ||| |||| ||||| |||||||| |||| Sbjct 768794 CTGTTCAACGCCATCGAGACCTTGCCGTGTGTCAGAGAA-AAGGCAGACTGGGCTATCAA 768852 Query 42668 CTGGATCGA----GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 ||||||| || || | | ||| | ||| | | || || ||| | || | Sbjct 768853 GTGGATCGGTGATGATTCTTCCCCCTACGCTGAGCGTG----TTGTTGCTTTTGCTGCTG 768908 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 | || |||||||||||||| ||| ||||||| | ||||||||| | ||| ||| || Sbjct 768909 TTGAAGGCATCTTCTTCTCTGGCTCCTTCGCTGCAATCTTCTGGTTGAAGAAGAGGGGAA 768968 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| || ||||| ||| || || ||||||||| | ||||||| Sbjct 768969 TCATGCCTGGTCTCACATTCAGTAATGAGCTCATCAGCCGAGACGAGG 769016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944288064032320