Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq156 161 2e-34 seq170 131 4e-25 >seq156 Length=1397929 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || || |||| ||| |||||| |||||||| || || | ||| |||||| Sbjct 357931 AGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAGAGTGTGCGT 357872 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| || || ||||| ||||| |||| | ||| ||| |||||||| ||| Sbjct 357871 CCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGGATTCCCTCT 357812 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || |||||||| || |||||||||||||| || | || || || || || || ||| Sbjct 357811 TTGTCCTGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACCTCAAGGGTG 357752 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| || || |||||||||||||| |||||||| ||| Sbjct 357751 ATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATGATG 357710 Score = 114 bits (126), Expect = 3e-20 Identities = 145/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || || || | ||||| || || ||| Sbjct 360405 TCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAG 360346 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| |||||| ||||| ||||| || |||||||| || |||||| Sbjct 360345 ATAAGACGTTGCTGA---TCTGGGGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACG 360289 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || ||||| || ||||| || || || ||||| ||| Sbjct 360288 TTCTCAATGGTGTC---CGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTCAGGGTC 360232 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 360231 TTGACGAAGATCTGCAT 360215 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || || || | ||||| || || ||| Sbjct 359949 TCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAG 359890 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| |||||| ||||| ||||| || |||||||| || |||||| Sbjct 359889 ATAAGACGTTGCTGA---TCTGGGGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACG 359833 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || ||||| || ||||| || || || ||||| |||||| Sbjct 359832 TTCTCAATGGTGTCAGATGGCTCCACTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTG 359773 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 359772 ACGAAGATCTGCAT 359759 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || ||||| || ||||| || || ||| Sbjct 360177 TCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCTTCCAACTGTTTGCCGGCAAAG 360118 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| || ||||| ||||| || |||||||| || |||||||| Sbjct 360117 ATCAATCTCTGCTGATCGGGAGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTC 360058 Query 288403 TCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || ||||| || ||||| || || || ||||| |||||| Sbjct 360057 TCAATGGTGTC---CGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTG 360001 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 360000 ACGAAGATCTGCAT 359987 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || || || | ||||| || || ||| Sbjct 360633 TCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAG 360574 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| ||||| ||||| ||||| || |||||||| || |||||| Sbjct 360573 ATCAATCTCTGCTGA---TCTGGAGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACG 360517 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || ||||| || ||||| || || || ||||| |||||| Sbjct 360516 TTCTCAATGGTGTCAGATGGCTCCACTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTG 360457 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 360456 ACGAAGATCTGCAT 360443 >seq170 Length=1283570 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | ||| || ||||||| ||| ||||| |||||||| |||| Sbjct 1121643 CATG-CCTCCTCGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGT 1121701 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || |||||||||||||| || | Sbjct 1121702 CTGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAG 1121761 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| |||||||| ||||| || || || ||||| || || |||| || | || Sbjct 1121762 GGGGGATCCCTTCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTT 1121821 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || || || || || || || |||||||| Sbjct 1121822 CCACCTCAAGGGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179588924757096