Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq156 122 8e-23 >seq156 Length=1397929 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||||||| | || |||||||| || || ||||| || || || || | Sbjct 360201 CGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCA 360142 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| || || ||||||||| ||||||||||||||| || ||||| ||| Sbjct 360141 TCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATTCCCTCTTTG 360082 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| ||| | | || | |||||||| ||| ||||| | || | Sbjct 360081 TCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAGAGTGATG 360022 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| ||||| || || || || |||||||| Sbjct 360021 GTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359987 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || || ||||| || | || || ||||| || ||||||||||| | ||||| Sbjct 357929 TCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAGAGTGTGCGTCC 357870 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | ||| ||||||||| | ||||| | |||||||||||| || || ||||| || Sbjct 357869 ATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGGATTCCCTCTTT 357810 Query 127018 GTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 |||| ||| || ||| || | | ||| | ||||| | ||| || || | ||| | Sbjct 357809 GTCCTGGATCTT-TGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACCTCAAGGGTGA 357751 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || ||||| || || || ||||||||| Sbjct 357750 TGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATG 357713 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || || ||||| || || || || ||| || || | ||| || Sbjct 358616 CACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCGGACAAGGTTCTGCCATCCTC 358557 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| || || |||| | | ||||||||| || || || ||||| |||||| Sbjct 358556 AAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTG 358497 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || || | | || | |||||| | ||| ||||| | || | || || Sbjct 358496 GATCTTAGCTTTCACATTCTCAATGGTGTCAGACGGCTCCACTTCCAATGTGATAGTCTT 358437 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || || |||||||||||||| Sbjct 358436 GCCTGTGAGGGTCTTCACAAAAATCTGCAT 358407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475475051631680