Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq156 95.1 8e-15 >seq156 Length=1397929 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || |||||| |||||||| | |||| ||||| || || || || || | | Sbjct 360213 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360154 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||| ||||| ||| |||| || || | ||||||||| | || Sbjct 360153 AAGGTACGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGA 360094 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| || | || | | ||||| | ||||| Sbjct 360093 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360034 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || ||||| || || | || || |||||||||||||| Sbjct 360033 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359987 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || |||||| |||||||| | |||| ||||| || || || || || | | Sbjct 360441 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360382 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | ||||| ||| |||| || | ||| |||||||| | ||| Sbjct 360381 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360322 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| || | || | | ||||| | ||||| Sbjct 360321 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360262 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || ||||| || || | || || |||||||||||||| Sbjct 360261 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360215 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || |||||| |||||||| | |||| ||||| || || || || || | | Sbjct 359985 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359926 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | ||||| ||| |||| || | ||| |||||||| | ||| Sbjct 359925 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 359866 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| || | || | | ||||| | ||||| Sbjct 359865 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 359806 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || ||||| || || | || || |||||||||||||| Sbjct 359805 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347351260187756