Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq156 113 3e-20 >seq156 Length=1397929 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | |||| |||| ||||| |||| ||||||||| || || || || || Sbjct 357940 CCTCCCCTAAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAG 357881 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| |||| ||| ||||| || || || | | ||||| || |||| Sbjct 357880 AGTGTGCGTCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGG 357821 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| ||| ||| | | || | ||| | ||| || Sbjct 357820 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACC 357761 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || ||||||||||| || ||||||||||| Sbjct 357760 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 357714 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || ||||| || | || | ||||| || | |||| ||||||||| ||||||||||| Sbjct 358636 TTACCTCCTCTGAGTCTGAGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCG 358577 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || | | ||| |||| || |||||||| |||||||| || || | ||||| ||| | Sbjct 358576 GACAAGGTTCTGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGG 358517 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | ||||| ||||| ||||| ||| || || || || | ||| | || Sbjct 358516 GGGATTCCCTCTTTGTCCTGGATCTTAGCTTTCAC--ATTCTCAATGGTGTCAGACGGCT 358459 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | || || || || || ||||| ||||||||||| |||||||| Sbjct 358458 CCACTTCCAATGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAAATCTGCAT 358407 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||| | || ||||| || | ||| |||||||| ||||| |||||||| Sbjct 359985 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359926 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || |||||||| |||||||| || || |||||||| ||| | || Sbjct 359925 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 359866 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| || || || ||| | || | ||| | ||| || Sbjct 359865 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 359806 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || |||||||| || || || ||||| || |||||||||||| Sbjct 359805 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 359758 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||| | || ||||| || | ||| |||||||| ||||| |||||||| Sbjct 360669 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360610 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || |||||||| |||||||| || | || ||||| ||| | || Sbjct 360609 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 360550 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| || || || ||| | || | ||| | ||| || Sbjct 360549 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 360490 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || |||||||| || || || ||||| || |||||||||||| Sbjct 360489 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 360442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324616460563296