Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq389 140 3e-27 seq156 109 4e-18 seq170 91.5 1e-12 >seq389 Length=822451 Score = 140 bits (154), Expect = 3e-27 Identities = 336/502 (67%), Gaps = 20/502 (4%) Strand=Plus/Minus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || ||||| || || ||||| || ||||| || |||||||| || || || || || Sbjct 792307 GGAAAAGTGGAGATCATTGCAAACGATCAGGGCAACAGAACCACACCGAGCTACGTGGCT 792248 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATC 550163 ||||| || | ||| | |||||||||| || ||| ||||||| | ||| |||| Sbjct 792247 TTCACCGACAGTGAGAGGCTCATTGGTGATGCTGCCAAAAATCAAGCTGCGCTG--AATC 792190 Query 550164 CTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTG 550223 | ||||||| | || ||||| ||||| | ||||| |||| ||| | ||| ||| | Sbjct 792189 CGGCCAATACCGTGTTCGATGCCAAACGACTCATTGGGAGAAAGTTTGACGATAAGACAG 792130 Query 550224 TTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAA----CCT 550279 |||||| || |||||||| ||||| ||| || | || | || ||| | || Sbjct 792129 TTCAGGATGACATGAAGCACTGGCCCTTCAAAGTGGTGGAAGT----GGATCATCGGCCC 792074 Query 550280 TATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTT---CACCAGAACAAATTTCA 550336 | ||| |||| | |||| || || |||| | | | || || | Sbjct 792073 AAAATTCAAGCAGAATACAAAGG---TGAGAACAAATTGTTTGCTGCTGAGGAAGTGAGC 792017 Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTAC 550395 || |||||| | | || ||||| | || || || ||| |||| ||||| || || Sbjct 792016 TCCATGGTTCTGACAAAGATGAAGGAGACCGCGGAGGCGTTT-TTGGGGAAGAAAGTGAC 791958 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||| || || || || || || || || || ||||| || | ||||| || || || Sbjct 791957 CGATGCTGTCATCACGGTGCCTGCGTACTTCAACGACTCTCAGAGGCAAGCCACCAAGGA 791898 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||| ||||||||||| || || || || || ||||| || |||||||| || Sbjct 791897 TGCCGGCGCTATCGCTGGACTTAACGTGCTGCGCATAATTAATGAGCCCACTGCTGCCGC 791838 Query 550516 ACTTGCATATGGACTTGATAAA 550537 | || || || || || ||| Sbjct 791837 TTTGGCGTACGGGCTGGACAAA 791816 >seq156 Length=1397929 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| | || ||||||||||| ||| | | ||| || ||||| || | | || | Sbjct 360888 AGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGG--ATGTTGTAGTCGGACAAGGTAC 360831 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||||||||| ||||| |||||||| ||||| | ||||||||| || |||||||| | Sbjct 360830 GGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCCT 360771 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 |||| ||||| ||||| || || |||||| || || | || | || ||| ||| Sbjct 360770 CTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCG-ATGGCTCCACTTCCAGA 360712 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||||| ||||| || || || || || || |||||| Sbjct 360711 GTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCATA 360670 Score = 107 bits (118), Expect = 2e-17 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| ||||| ||||| |||||||| || | ||| |||||||| ||||||||||| ||||| Sbjct 360598 ATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCCTCTTT 360539 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||||| ||||| || || |||||| || |||| || | || ||| ||||| | Sbjct 360538 GTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAG-ATGGCTCCACTTCTAGAGTGA 360480 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| ||||| || || || ||||| || |||||| Sbjct 360479 TGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 360442 Score = 98.7 bits (108), Expect = 8e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| ||||| ||||| |||||||| || | ||| |||||||| ||||||||||| ||||| Sbjct 359686 ATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCCTCTTT 359627 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||||| ||||| || || |||||| || || | || | || ||| ||||| | Sbjct 359626 GTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCG-ATGGCTCCACTTCCAGAGTGA 359568 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| ||||| || || || || || || |||||| Sbjct 359567 TGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCATA 359530 Score = 98.7 bits (108), Expect = 8e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| | ||||| |||||||| || | ||| |||||||| ||||||||||| ||||| Sbjct 360142 ATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATTCCCTCTTT 360083 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||||| ||||| || || |||||| || || | || | || ||| ||||| | Sbjct 360082 GTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCG-ATGGCTCCACTTCCAGAGTGA 360024 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| ||||| || || || ||||| || |||||| Sbjct 360023 TGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 359986 >seq170 Length=1283570 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| || |||||||||||||| ||| | | ||| |||||||| || | ||||| Sbjct 1121655 GAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGG--ATATTGTAGTCTGACAGAGTG 1121712 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| || || || || ||||| || || | ||||| ||||| || || ||| Sbjct 1121713 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATCCCT 1121772 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||| || || || || || || |||||| || || | || | || || || Sbjct 1121773 TCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCG-ATGGTTCCACCTCAAG 1121831 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || |||||||| ||||| || || || ||||| Sbjct 1121832 GGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029066904302680