Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq677 120 6e-22 seq88 120 6e-22 seq284 107 4e-18 >seq677 Length=433858 Score = 120 bits (132), Expect = 6e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 |||||||| | ||||||| || | ||| ||||| ||||||||| |||||||| | Sbjct 164048 GGACACATCAAAGTCCAGTCTCCATTTTCTTCCACTCTGCGCATGAACAAGTCCGGGATC 163989 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 |||| ||| ||||| ||||||| |||| ||| || | |||| ||| || ||| Sbjct 163988 CACATGGCGTAGAACAAATCCCTGGCCCTCTGCTCCTCAGCACCAGTGTTCTTCTTCAGG 163929 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || ||||||||||| || ||||| ||||||| ||| | |||||| || || ||| Sbjct 163928 TCCAAGAACTCAAAGATGTCGGCATGCCATGGCTCCAGGTAAACGGCAAACGCTCCAGGC 163869 Query 213960 CTCT 213963 |||| Sbjct 163868 CTCT 163865 Score = 87.8 bits (96), Expect = 3e-12 Identities = 174/252 (69%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 213108 TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAA 213167 || || ||| |||||| || |||| |||||||||||| || || ||| | || Sbjct 168073 TCTTTAACGCCCCACATATCGTGTTGCAGGATGCCTTTGCTGACAGGAGAGCCTTCATAT 168014 Query 213168 GAGGAGTAGGGGCC--ATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGT 213225 | |||||| || || | || || ||||| || || | ||||||||| ||| Sbjct 168013 GTCTCGTAGGGTCCTAATTTTTCT--GCAAGCTCACAACTGGCATCCAGGGCAGCAAAGT 167956 Query 213226 AGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGG--GACGTGAAGGGCAT 213283 | || || ||||| |||||| |||| |||| ||||||||||||| | | ||||| || Sbjct 167955 AAATCGTCTCAAAGATCTCCTTGTTCAGCTGCTTGGCCTCTGGGCTGTC-AAAAGGGAAT 167897 Query 213284 CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCT 213343 | |||| ||| ||||||| || ||||| || || | |||||||| | ||| | Sbjct 167896 C-TCATCAAGATGAAAGCATCAGCAAGACCCTGAACTCCCAACCCGATGGGACGGTGACG 167838 Query 213344 CAGGTTAGACTT 213355 || ||| || || Sbjct 167837 CATGTTGGAATT 167826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||||| |||||| || |||||||||||||||||| ||| Sbjct 166425 GTGTACTCCACAATCTCTGTGCACAAGTTGCTACACTTGATGGTGCCCAGGTTCTGCTGG 166366 Query 213588 TTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 || |||||| || | ||| || ||||| | |||||| || | || ||||| Sbjct 166365 TTGGACTTT-CGGTTACAGCTGTCTTTGTACAACATGTACGGAGTTCCTGTCTC 166313 >seq88 Length=1720321 Score = 120 bits (132), Expect = 6e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 |||||||| | ||||||| || | ||| ||||| ||||||||| |||||||| | Sbjct 1607765 GGACACATCAAAGTCCAGTCTCCATTTTCTTCCACTCTGCGCATGAACAAGTCCGGGATC 1607824 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 |||| ||| ||||| ||||||| |||| ||| || | |||| ||| || ||| Sbjct 1607825 CACATGGCGTAGAACAAATCCCTGGCCCTCTGCTCCTCAGCACCAGTGTTCTTCTTCAGG 1607884 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || ||||||||||| || ||||| ||||||| ||| | |||||| || || ||| Sbjct 1607885 TCCAAGAACTCAAAGATGTCGGCATGCCATGGCTCCAGGTAAACGGCAAACGCTCCAGGC 1607944 Query 213960 CTCT 213963 |||| Sbjct 1607945 CTCT 1607948 >seq284 Length=917541 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| |||||||||||| | || ||| |||||||||||||| ||||||| || Sbjct 769014 TCGTCTCGGCTGATGAGCTCATTACTGAATGTGAGACCAGGCATGATTCCCCTCTTCTTC 768955 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 | |||||| ||||| ||||| |||||||||||||||||||| || || || || || || Sbjct 768954 AACCAGAAGATTGCAGCGAAGGAGCCAGAGAAGAAGATGCCTTCAACAGCAGCAAAAGC 768896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931482357498880