Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq169 107 1e-17 seq170 91.5 1e-12 seq156 89.7 3e-12 >seq169 Length=1331924 Score = 107 bits (118), Expect = 1e-17 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || || ||||| || | || || || || || || || |||||||||||||||||||| Sbjct 134686 GTCACAGATGCTGTGGTCACAGTGCCTGCCTACTTCAACGATTCTCAACGTCAAGCAACA 134627 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||| || |||| || |||| || || ||||| | || || |||||||| ||||| Sbjct 134626 AAAGACGCTGGAACCATCTCAGGCCTCAACGTTTTGAGAATCATCAATGAACCCACAGCC 134567 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTT 474907 || || |||| || ||||| || ||||| || || || || ||| | |||||| Sbjct 134566 GCTGCCATTGCCTACGGTCTGGACAAGAAAGTTGGCACTGAGAGGAACGTTCTCATCTTT 134507 Query 474908 GATTGTGGAGGT 474919 ||| ||| ||| Sbjct 134506 GATCTTGGTGGT 134495 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 |||||||| | ||||| || ||| ||||||| |||| || |||| ||||| || Sbjct 136263 GGTATTGACCTGGGAACGACCTACTCGTGTGTAGGCGTTTTCCAGCATGGCAAAGTTGAG 136204 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||| || || || || |||||||| ||| ||||| | || || || | | Sbjct 136203 ATCATTGCCAACGATCAGGGAAACAGAACAACCCCAAGCTATGTAGCCTTCACAGACAAT 136144 Query 474455 GAACATCTTATTGGAGATGCTGCTAA 474480 || | ||| |||||||||||||| || Sbjct 136143 GAGCGTCTCATTGGAGATGCTGCCAA 136118 >seq170 Length=1283570 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || ||||||||||| || ||||| | ||| || || | ||||| Sbjct 1121653 CGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTG 1121712 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| || ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct 1121713 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATCCCT 1121772 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| || ||||| || ||| |||||||| || | || |||||| Sbjct 1121773 TCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTTCCACCTCAAGG 1121832 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || || || || || || Sbjct 1121833 GTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTG 1121870 >seq156 Length=1397929 Score = 89.7 bits (98), Expect = 3e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || || || |||||||| |||||| | ||| ||||| | || || | |||| Sbjct 357925 AGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAGAGTGTGCGTCCATCT 357866 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || | ||||||||||| ||||| | | || ||||| || || ||||| || ||||| Sbjct 357865 TCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGGATTCCCTCTTTGTCC 357806 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740 || |||||| ||| || |||||| || |||| | |||||||| || || Sbjct 357805 TGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACCTCAAGGGTGATGGTC 357746 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||| ||||| || || Sbjct 357745 TTGCCAGTGAGAGTCTTGACGAAGATCTG 357717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267993379501136