Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq156 127 4e-24 seq170 100 6e-16 >seq156 Length=1397929 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| ||||| | || ||||| | ||| | |||||| ||| || || || Sbjct 360672 ATACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCC 360613 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || | ||||| || |||||||| |||||||| ||||| || Sbjct 360612 GACAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGA 360553 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| ||||| || || || || | || || | || Sbjct 360552 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCC 360493 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| |||||||| ||||| | || || | || |||||||| Sbjct 360492 ACTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360443 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| ||||| | || ||||| | ||| | |||||| ||| || || || Sbjct 359988 ATACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCC 359929 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || | ||||| || |||||||| | | || ||||| || Sbjct 359928 GACAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGG 359869 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| ||||| || || || || | || || | || Sbjct 359868 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCC 359809 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| |||||||| ||||| | || || | || |||||||| Sbjct 359808 ACTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359759 >seq170 Length=1283570 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||||| | || | ||| | || | |||||| |||||| || || Sbjct 1121644 ATGCCTCCTCGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCT 1121703 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||||||||| | | ||| || ||||| Sbjct 1121704 GACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGG 1121763 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || ||||| || || ||||| |||| || || | ||| Sbjct 1121764 GGGATCCCTTCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTTCC 1121823 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | |||||| | ||| |||||||| Sbjct 1121824 ACCTCAAGGGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984425357668200