Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq156 176 3e-39 >seq156 Length=1397929 Score = 176 bits (194), Expect = 3e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| ||||||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 359757 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359698 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||| ||| | |||||||| |||||||| || ||| Sbjct 359697 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 359638 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| || || | || | ||||| || | || ||| Sbjct 359637 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 359578 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||||||||| | ||| || ||||| |||||||| Sbjct 359577 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 359531 Score = 176 bits (194), Expect = 3e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| ||||||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 360669 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360610 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||| ||| | |||||||| |||||||| || ||| Sbjct 360609 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 360550 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| || || | || | |||||||| | || ||| Sbjct 360549 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 360490 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||||||||| | ||| || || || |||||||| Sbjct 360489 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360443 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| ||||||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 360213 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360154 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || | |||||||| ||| | |||||||| |||||||| || ||| Sbjct 360153 AAGGTACGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGA 360094 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| || || | || | ||||| || | || ||| Sbjct 360093 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360034 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||||||||| | ||| || || || |||||||| Sbjct 360033 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359987 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| ||||||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 359985 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 359926 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||| ||| | || | | ||||||||| || ||| Sbjct 359925 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 359866 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| || || | || | |||||||| | || ||| Sbjct 359865 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACT 359806 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||||||||| | ||| || || || |||||||| Sbjct 359805 TCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359759 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| ||||||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 360441 CCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 360382 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||| ||| | || | | ||||||||| || ||| Sbjct 360381 AAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360322 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| || || | || | ||||| || | || ||| Sbjct 360321 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACT 360262 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||||||||| | ||| || || || |||||||| Sbjct 360261 TCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360215 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | |||||||| ||||| ||||||||||| || || || ||||| | Sbjct 357940 CCTCCCCTAAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAG 357881 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || | || || ||||| | ||||| || |||||||| ||||| Sbjct 357880 AGTGTGCGTCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGG 357821 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| ||| || |||| | |||||||| | || || Sbjct 357820 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACC 357761 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | || || || || |||||||| Sbjct 357760 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 357714 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||||||| || ||||||||||| || |||||||| || | | ||| | ||| Sbjct 358618 AGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCGGACAAGGTTCTGCCATCC 358559 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || |||||||| ||| | || | || |||||||| || || || ||||||||||| Sbjct 358558 TCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCCTCTTTGTCC 358499 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| ||| | || | |||||||| | || ||||| | || ||||| Sbjct 358498 TGGATCTTAGCTTTCACATTCTCAATGGTGTCAGACGGCTCCACTTCCAATGTGATAGTC 358439 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || | ||| || ||||| ||||||||| Sbjct 358438 TTGCCTGTGAGGGTCTTCACAAAAATCTGCATT 358406 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||||| || | |||||| || || ||||| || ||||| || || | Sbjct 360898 TCCACCACGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGA 360839 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || ||| || || |||||||| ||| | || | | ||||||||| || || Sbjct 360838 CAAGGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGG 360779 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| |||||||||||||| | ||| || || | || | ||||| || | || || Sbjct 360778 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCAC 360719 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || ||||||||||| | ||| || ||||| |||||||| Sbjct 360718 TTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 360671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385198861870812