Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq156 123 2e-23 seq170 104 2e-17 >seq156 Length=1397929 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||||||| |||||| |||||| || |||||||| || || Sbjct 359758 ACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 359699 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||| |||||||| ||||| | |||||||||| | || Sbjct 359698 CAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGG 359639 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| |||| | | ||| |||||| || |||| Sbjct 359638 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTCTCAATGGTGTCCGATGGCTCCA 359580 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || ||||||||||||||| Sbjct 359579 CTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCATA 359530 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||||||| |||||| |||||| || |||||||| || || Sbjct 360214 ACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 360155 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||| ||||| |||||||| ||||| | ||||||||| | || Sbjct 360154 CAAGGTACGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 360095 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| |||| | | ||| |||||| || |||| Sbjct 360094 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTCTCAATGGTGTCCGATGGCTCCA 360036 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || || |||||||||||| Sbjct 360035 CTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 359986 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||||||| |||||| |||||| || |||||||| || || Sbjct 360670 ACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 360611 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||| |||||||| ||||| | |||||||||| | || Sbjct 360610 CAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGG 360551 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| |||| | | ||| |||||| || |||| Sbjct 360550 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTCTCAATGGTGTCAGATGGCTCCA 360492 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || || |||||||||||| Sbjct 360491 CTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 360442 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||||||| |||||| |||||| || |||||||| || || Sbjct 359986 ACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 359927 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||| |||||||| || | ||| ||||||||| | || Sbjct 359926 CAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGG 359867 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| |||| | | ||| |||||| || |||| Sbjct 359866 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTCTCAATGGTGTCAGATGGCTCCA 359808 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || || |||||||||||| Sbjct 359807 CTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 359758 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||||||| |||||| |||||| || |||||||| || || Sbjct 360442 ACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 360383 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||| |||||||| || | ||| ||||||||| | || Sbjct 360382 CAAGGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGG 360323 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| |||| | | ||| |||||| || |||| Sbjct 360322 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTCTCAATGGTGTCCGATGGCTCCA 360264 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || || |||||||||||| Sbjct 360263 CTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 360214 Score = 107 bits (118), Expect = 1e-18 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 33508 CAAATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGT 33567 |||| |||| ||||| || || | | | ||||| || || ||| ||||| || Sbjct 357955 CAAAGGAAATTCTCACCTCCCCTAAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGG 357896 Query 33568 ATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGC 33627 || |||||||| |||||||||||| | || ||||| || ||||| || |||||||| | | Sbjct 357895 ATATTGTAATCTGAGAGTGTGCGTCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTC 357836 Query 33628 TGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGT 33686 |||||||| |||| | || |||||||| || || || || || | || | || Sbjct 357835 TGCTGATCGGGCGGGATTCCCTCTTTGTCCTGGATCTT-TGCTTTCACGTTTTCAATTGT 357777 Query 33687 GTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| | ||||| |||| ||||| || || || || | || || || |||||||| Sbjct 357776 GTCAGACGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTG 357717 Query 33747 CAT 33749 ||| Sbjct 357716 CAT 357714 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| || || | ||| || || |||||| || |||||||| ||||| Sbjct 360897 CCACCACGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAC 360838 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || || | ||||| |||||||| || | ||| ||||||||| | || Sbjct 360837 AAGGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGA 360778 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||| |||| | | ||| |||||| || ||||| Sbjct 360777 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTCTCAATGGTGTCCGATGGCTCCAC 360719 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || | || || ||||||||||||||| Sbjct 360718 TTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCATA 360670 >seq170 Length=1283570 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| | ||| | ||| | ||| || ||| |||||| || || Sbjct 1121635 AAAATCTGCATGCCTCCTCGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATA 1121694 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || ||||| | || |||| || || || ||||| |||| ||||||| Sbjct 1121695 TTGTAGTCTGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGC 1121754 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||||||||||| || || ||| |||| || | ||||| Sbjct 1121755 TGGTCAGGGGGGATCCCTTCTTTGTCCTGTATCTTGGCCTTC-ACATTCTCAATAGTGTC 1121813 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||||| |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 1121814 CGATGGTTCCACCTCAAGGGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328686645661440