Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq156 123 6e-23 seq170 96.9 8e-15 >seq156 Length=1397929 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| |||||| Sbjct 357717 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAGCCGTCTGAC 357776 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || |||||||| ||| || || ||||| ||||| ||| || || Sbjct 357777 ACAATTGAAAACGTGAAAGCAAA-GATCCAGGACAAAGAGGGAATCCCGCCCGATCAGCA 357835 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || ||||| ||||||||||||||||||||| | || | | |||||||| | Sbjct 357836 GAGGTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGACGCACACTCTCAGATTACAATAT 357895 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 ||||||||| || || |||||||| || |||||||| Sbjct 357896 CCAGAAAGAATCCACACTTCACCTGGTGCTGAGACTT 357932 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || ||||| |||||| |||||||||| || ||| Sbjct 360674 CAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCGGAC 360733 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| ||||| |||||| || || ||| Sbjct 360734 ACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAA 360793 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| || ||| | |||||||| | || ||| |||| |||||| || Sbjct 360794 CGTCTTATCTTTGCCGGCAAACAGCTTGAAGATGGCCGTACCTTGTCCGACTACAACATC 360853 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || ||||| || || ||| | || || Sbjct 360854 CAGAAAGAGTCAACCCTTCATCTAGTCTTGCGTCTGCG 360891 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || ||||| |||||| |||||||||| || ||| Sbjct 359990 CAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCGGAC 360049 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| ||||| |||||| || || || Sbjct 360050 ACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCCGATCAGCAG 360109 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| || |||||||||||||| | || ||| | || |||||| || Sbjct 360110 AGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGTACCTTGTCGGACTACAACATC 360169 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| ||||| || Sbjct 360170 CAGAAAGAGTCCACTCTCCA 360189 Score = 104 bits (114), Expect = 6e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || |||||||| || || ||||| ||||||||||| |||||| Sbjct 358410 CAGATTTTTGTGAAGACCCTCACAGGCAAGACTATCACATTGGAAGTGGAGCCGTCTGAC 358469 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||||| || || ||||| ||||| || || || Sbjct 358470 ACCATTGAGAATGTGAAAGC-TAAGATCCAGGACAAAGAGGGAATCCCCCCAGATCAGCA 358528 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || |||||||| ||||| || ||| | || ||||| || || ||| |||| || ||| | Sbjct 358529 GAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCAGAACCTTGTCCGACTATAACAT 358588 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 ||||||||| || || || || Sbjct 358589 CCAGAAAGAATCCACACTCCA 358609 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || ||||| |||||| |||||||||| || ||| Sbjct 359534 CAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCGGAC 359593 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| ||||| |||||| || || || Sbjct 359594 ACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAGCAG 359653 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| || ||| | || ||||| | || ||| | || |||||| || Sbjct 359654 AGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAACATC 359713 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| ||||| || Sbjct 359714 CAGAAAGAGTCCACTCTCCA 359733 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || ||||| |||||| | |||||||| |||||| Sbjct 359762 CAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGTGGAGCCATCTGAC 359821 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| ||||| |||||| || || ||| Sbjct 359822 ACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAA 359881 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| || ||| | || ||||| | || ||| | || |||||| || Sbjct 359882 CGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAACATC 359941 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| ||||| || Sbjct 359942 CAGAAAGAGTCCACTCTCCA 359961 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || ||||| |||||| |||||||||| || ||| Sbjct 360218 CAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCGGAC 360277 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| ||||| |||||| || || ||| Sbjct 360278 ACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAA 360337 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| || ||| | || ||||| | || ||| | || |||||| || Sbjct 360338 CGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAACATC 360397 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| ||||| || Sbjct 360398 CAGAAAGAGTCCACTCTCCA 360417 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || ||||| |||||| | |||||||| |||||| Sbjct 360446 CAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGTGGAGCCATCTGAC 360505 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| ||||| |||||| || || || Sbjct 360506 ACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAGCAG 360565 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| || ||| | || ||||| | || ||| | || |||||| || Sbjct 360566 AGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAACATC 360625 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| ||||| || Sbjct 360626 CAGAAAGAGTCCACTCTCCA 360645 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || || ||||| || ||||||||||||| || ||||| | ||| || Sbjct 360891 CGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAAGGTA 360832 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||| ||||| || ||||| |||||||| ||||| ||| Sbjct 360831 CGGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGA 360787 >seq170 Length=1283570 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| | || |||||| || ||| Sbjct 1121870 CAGATCTTTGTGAAAACACTTACTGGCAAGACAATCACCCTTGAGGTGGAACCATCGGAC 1121811 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||| || || ||| || Sbjct 1121810 ACTATTGAGAATGTGAAGGCCAAGATACAGGACAAAGAAGGGATCCCCCCTGACCAGCAG 1121751 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | ||| || | || ||||| || Sbjct 1121750 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCAGACTACAATATC 1121691 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || ||||| ||||| Sbjct 1121690 CAGAAAGAGTCCACCCTTCATCTTGT 1121665 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| ||||| || ||||||||||||| ||| ||||| | || ||| | ||||||||| Sbjct 1115044 ACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCGGACAGAGTGCGGCCATCTTCC 1115103 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| || |||||||| Sbjct 1115104 AGCTGCTTGCCAGCAAAGATCAGACGTTGTTG 1115135 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| ||||| || ||||||||||||| ||| ||||| | || ||| | ||||||||| Sbjct 1118282 ACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCTTCC 1118341 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || || ||||| || || || ||| Sbjct 1118342 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGA 1118374 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| ||||| || ||||||||||||| ||| ||||| | || ||| | ||||||||| Sbjct 1114051 ACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCTTCC 1114110 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| || || || || Sbjct 1114111 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTG 1114142 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| ||||| || ||||||||||||| ||| ||||| | || ||| | ||||||||| Sbjct 1117514 ACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCTTCC 1117573 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| || || || || Sbjct 1117574 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTG 1117605 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| ||||| || ||||||||||||| ||| ||||| | || ||| | ||||||||| Sbjct 1120834 ACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCTTCC 1120893 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| || || || || Sbjct 1120894 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTG 1120925 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| ||||| || ||||||||||||| ||| ||||| | || ||| | ||||||||| Sbjct 1121665 ACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCTTCC 1121724 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| || || || || Sbjct 1121725 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTG 1121756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181755204513772