Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq536 86.0 7e-12 seq284 84.2 2e-11 >seq536 Length=563759 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 118157 ACCTGTTTTATG-GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCC 118215 |||||||| ||| ||||| || ||||||||| | | ||||| || || |||||||| || Sbjct 376307 ACCTGTTT-ATGAGTGGCTTCTCGAACGTTGAGTAGTTTACCTCGAAGGGGAAACACACC 376249 Query 118216 AAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACC 118275 || || ||||||||||| | || || || | ||| | | ||| || ||||| || Sbjct 376248 GTACCGATCTCGGCCCACAACTCCCAGCCCAGCCACAGCCAAAGACTTGGCTGAGTCTCC 376189 Query 118276 CTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATC 118335 |||||| | || ||||| || | || | | || ||||| |||||||| || Sbjct 376188 CTCGGTCAAGATGAGAGTACAGTGTTTGGAGTTCTTGGTGCCGGCATCGTTAGCATCGTC 376129 Query 118336 CAGCTTCGG 118344 |||||| || Sbjct 376128 CAGCTTGGG 376120 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 152923 ACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCG 152982 |||||||| ||||| || ||||| ||| | | || || || || |||||||| ||| Sbjct 376307 ACCTGTTTATGAGTGGCTTCTCGAACGTTGAGTAGTTTACCTCGAAGGGGAAACACACCG 376248 Query 152983 AACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCC 153042 || | ||||| ||||| | ||| || || | ||| | | || || ||||| ||| Sbjct 376247 TACCGATCTCGGCCCACAACTCCCAGCCCAGCCACAGCCAAAGACTTGGCTGAGTCTCCC 376188 Query 153043 TCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCA 153102 ||||| | || || ||||||| | || | || ||||| ||| || ||||| Sbjct 376187 TCGGTCAAGATGAGAGTACAGTGTTTGGAGTTCTTGGTGCCGGCATCGTTAGCATCGTCC 376128 Query 153103 AGCTTGGGGATTCCC 153117 ||||||||||| ||| Sbjct 376127 AGCTTGGGGATACCC 376113 >seq284 Length=917541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||| ||| || | ||||| || | || |||||||| | ||| | ||||||| Sbjct 769014 TCGTCTCGGCTGATGAGCTCATTACTGAATGTGAGACCAGGCATGATTCCCCTCTTCTTC 768955 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| ||||| ||| |||||| ||| ||||||||||||||| ||| ||||| || Sbjct 768954 AACCAGAAGATTGCAGCGAAGGAGCCAGAGAAGAAGATGCCTTCAACAGCAGCAAAAGCA 768895 Query 74892 ACAA 74895 |||| Sbjct 768894 ACAA 768891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547186368253600