Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq156 183 3e-41 seq170 167 3e-36 seq769 95.1 1e-14 seq536 84.2 2e-11 seq937 82.4 9e-11 >seq156 Length=1397929 Score = 183 bits (202), Expect = 3e-41 Identities = 181/233 (78%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || ||||| || || ||||| || || ||| || Sbjct 360671 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 360730 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 360731 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 360790 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || || || || |||| |||||| | | ||||| || Sbjct 360791 CAACGTCTTATCTTTGCCGGCAAACAGCTTGAAGATGGCCGTACCTTGTCCGACTACAAC 360850 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGT 27638 |||| || || || || |||||||||||||||||||| || |||||| |||| Sbjct 360851 ATCCAGAAAGAGTCAACCCTTCATCTAGTCTTGCGTCTGCGTGGTGGA-AAGT 360902 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || ||||| || || ||| || | Sbjct 359759 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGTGGAGCCATCT 359818 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 359819 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 359878 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || || || ||||||| |||||| | | ||||| || Sbjct 359879 CAACGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 359938 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || |||||||| ||| | || ||||||| Sbjct 359939 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCT 359976 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || ||||| || || ||||| || || ||| || Sbjct 359531 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 359590 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 359591 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 359650 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || ||||||| |||||| | | ||||| || Sbjct 359651 CAGAGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 359710 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || |||||||| ||| | || ||||||| Sbjct 359711 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCT 359748 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || ||||| || || ||| || Sbjct 360215 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 360274 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || ||||| ||||||||||| ||||| ||| Sbjct 360275 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 360334 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || || || ||||||| |||||| | | ||||| || Sbjct 360335 CAACGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 360394 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || |||||||| ||| | || ||||||| Sbjct 360395 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCT 360432 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || ||||| || || ||| || | Sbjct 360443 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGTGGAGCCATCT 360502 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 360503 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 360562 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || ||||||| |||||| | | ||||| || Sbjct 360563 CAGAGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 360622 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || |||||||| ||| | || ||||||| Sbjct 360623 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCT 360660 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || ||||| || || ||| || Sbjct 359987 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 360046 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || ||||| |||||||||||||| || ||| Sbjct 360047 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCCGATCAG 360106 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || | || |||| |||||| | | ||||| || Sbjct 360107 CAGAGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGTACCTTGTCGGACTACAAC 360166 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || |||||||| ||| | || ||||||| Sbjct 360167 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCT 360204 Score = 140 bits (154), Expect = 4e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || ||||||||||| || | || || ||| | Sbjct 358406 AATGCAGATTTTTGTGAAGACCCTCACAGGCAAGACTATCACATTGGAAGTGGAGCCGTC 358465 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| |||| ||||| || |||||||| |||||||| || ||||| || Sbjct 358466 TGACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAAGAGGGAATCCCCCCAGATCA 358525 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || || ||||||| | ||| | | |||||||| Sbjct 358526 GCAGAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCAGAACCTTGTCCGACTATAA 358585 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 |||| || |||||||| || ||| Sbjct 358586 CATCCAGAAAGAATCCACACTCCAT 358610 >seq170 Length=1283570 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| |||||||| || || |||||||| || || Sbjct 1121873 ATGCAGATCTTTGTGAAAACACTTACTGGCAAGACAATCACCCTTGAGGTGGAACCATCG 1121814 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| || || |||||||| || || || || || |||||| Sbjct 1121813 GACACTATTGAGAATGTGAAGGCCAAGATACAGGACAAAGAAGGGATCCCCCCTGACCAG 1121754 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || || || ||||||| ||| Sbjct 1121753 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCAGACTACAAT 1121694 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| |||||||| || | ||||| || || || Sbjct 1121693 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTTCGTCTCCGAGGAGG 1121647 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| ||||||||||| ||||| || || |||| || Sbjct 1111913 GGAATCCCCCCTGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 1111854 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||||| ||| |||| || || ||||| |||||||| || | ||||| || Sbjct 1111853 ACTCTGTCAGACTACAATATCCAGAAAGAGTCCACCCTTCATCTTGTGCTTCGTCTCCGG 1111794 Query 27628 GGTGG 27632 || || Sbjct 1111793 GGAGG 1111789 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || |||||||| ||||| || || |||| || Sbjct 1114157 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 1114098 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||||| ||| |||| || || ||||| |||||||| || | ||||| || Sbjct 1114097 ACTCTGTCAGACTACAATATCCAGAAAGAGTCCACCCTTCATCTTGTGCTTCGTCTCCGA 1114038 Query 27628 GGTGG 27632 || || Sbjct 1114037 GGAGG 1114033 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || |||||||| ||||| || || |||| || Sbjct 1117620 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 1117561 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||||| ||| |||| || || ||||| |||||||| || | ||||| || Sbjct 1117560 ACTCTGTCAGACTACAATATCCAGAAAGAGTCCACCCTTCATCTTGTGCTTCGTCTCCGA 1117501 Query 27628 GGTGG 27632 || || Sbjct 1117500 GGAGG 1117496 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || |||||||| ||||| || || |||| || Sbjct 1120940 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 1120881 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||||| ||| |||| || || ||||| |||||||| || | ||||| || Sbjct 1120880 ACTCTGTCAGACTACAATATCCAGAAAGAGTCCACCCTTCATCTTGTGCTTCGTCTCCGA 1120821 Query 27628 GGTGG 27632 || || Sbjct 1120820 GGAGG 1120816 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || || ||||||||||| || |||||||| ||||| || || |||| || Sbjct 1118388 GGCATCCCCCCTGATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 1118329 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||||| ||| |||| || || ||||| |||||||| || | ||||| || Sbjct 1118328 ACTCTGTCAGACTACAATATCCAGAAAGAGTCCACCCTTCATCTTGTGCTTCGTCTCCGA 1118269 Query 27628 GGTGG 27632 || || Sbjct 1118268 GGAGG 1118264 >seq769 Length=365539 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||||||| | | ||||||||||| ||||| || ||||||| |||| Sbjct 68712 GGCATTCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGT 68653 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | ||||||| || | |||||||| || || ||||| | || ||| | || || Sbjct 68652 ACGTTGTCAGACTACAACATTCAAAAGGAGTCTACCCTTCACTTGGTGTTGAGACTCCGT 68593 Query 27628 GGTGG 27632 ||||| Sbjct 68592 GGTGG 68588 >seq536 Length=563759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 ||| ||||| ||||| | || |||||||||||||| || ||| |||| | || | Sbjct 382051 GGGTACCATCATCAACTTGGCCCAGAACTTTGTCGGCAGCAACAACTTGAATCTCCTGCA 382110 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240 ||| | || |||||||| ||| || | ||| ||||| || ||||| || ||||||| Sbjct 382111 GCCTTTAGGTCAGTTTGGTACCAGGATTCACGGAGGCAAAGACGCTGCCAGTCCCCGTTA 382170 Query 32241 CATCTTCAC 32249 ||||||||| Sbjct 382171 CATCTTCAC 382179 >seq937 Length=262530 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || |||||||| || || |||||||| || | Sbjct 206269 AATGCAGATTTTTGTGAAGACACTCACAGGCAAGACGATCACCCTTGAGGTGGAACCGTC 206328 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 ||| | ||||| |||| | ||||| || ||||||||||| || || || Sbjct 206329 TGACACCATTGAAAATGTCAAGGCAAAGATTCAGGACAAAGAAGGTAT 206376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570279517691840