Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq156 149 5e-31 seq170 118 9e-22 seq937 89.7 4e-13 >seq156 Length=1397929 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| ||||| | || ||||| |||||||| || || Sbjct 360671 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 360730 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct 360731 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 360790 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||||| | ||||| | ||| | ||||| |||||| Sbjct 360791 CAACGTCTTATCTTTGCCGGCAAACAGCTTGAAGATGGCCGTACCTTGTCCGACTACAAC 360850 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| ||| | ||| | || |||||| |||| ||||| Sbjct 360851 ATCCAGAAAGAGTCAACCCTTCATCTAGTCTTGCGTCTGCGTGGTGG 360897 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| ||||| | || ||||| |||||||| || || Sbjct 359987 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 360046 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| ||||||||||| || || || |||||||| Sbjct 360047 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCCGATCAG 360106 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| |||||||| | ||| | || || |||||| Sbjct 360107 CAGAGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGTACCTTGTCGGACTACAAC 360166 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | |||||||| ||||| || | || || || Sbjct 360167 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGGTAT 360216 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| ||||| | || ||||| |||||||| || || Sbjct 359531 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 359590 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct 359591 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 359650 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| | || || | ||| | || || |||||| Sbjct 359651 CAGAGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 359710 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | |||||||| ||||| || | || || || Sbjct 359711 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGGTAT 359760 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| ||||| | || ||||| |||||||| || || Sbjct 359759 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGTGGAGCCATCT 359818 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct 359819 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 359878 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||||| | || || | ||| | || || |||||| Sbjct 359879 CAACGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 359938 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | |||||||| ||||| || | || || || Sbjct 359939 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGGTAT 359988 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| ||||| | || ||||| |||||||| || || Sbjct 360215 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTGGAAGTGGAGCCATCG 360274 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct 360275 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 360334 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||||| | || || | ||| | || || |||||| Sbjct 360335 CAACGTCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 360394 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | |||||||| ||||| || | || || || Sbjct 360395 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGGTAT 360444 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| ||||| | || ||||| |||||||| || || Sbjct 360443 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACTCTAGAAGTGGAGCCATCT 360502 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct 360503 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 360562 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| | || || | ||| | || || |||||| Sbjct 360563 CAGAGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACCTTGTCGGACTACAAC 360622 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | |||||||| ||||| || | || || || Sbjct 360623 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTGAGAGGAGGTAT 360672 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| |||| || | |||||||| ||||| Sbjct 358407 ATGCAGATTTTTGTGAAGACCCTCACAGGCAAGACTATCACATTGGAAGTGGAGCCGTCT 358466 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || |||||||| || || || || ||||| Sbjct 358467 GACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAAGAGGGAATCCCCCCAGATCAG 358526 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||| | || || | ||| | ||||| || ||| Sbjct 358527 CAGAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCAGAACCTTGTCCGACTATAAC 358586 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || || || || | |||||||| Sbjct 358587 ATCCAGAAAGAATCCACACTCCATTTGGT 358615 >seq170 Length=1283570 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || |||||| | || || ||||| |||||||| || Sbjct 1121873 ATGCAGATCTTTGTGAAAACACTTACTGGCAAGACAATCACCCTTGAGGTGGAACCATCG 1121814 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||||||||| || || || || || Sbjct 1121813 GACACTATTGAGAATGTGAAGGCCAAGATACAGGACAAAGAAGGGATCCCCCCTGACCAG 1121754 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||||| | || | || || ||||| Sbjct 1121753 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCAGACTACAAT 1121694 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | ||| | || | ||| | || || ||||| Sbjct 1121693 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTTCGTCTCCGAGGAGGCAT 1121644 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| || ||| | || || |||||||| || || || Sbjct 1115025 CATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACACTTGAAGTAGAGCCCTC 1114966 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| | ||||||| || || || ||||||||||||||||| || Sbjct 1114965 AGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTAT 1114918 >seq937 Length=262530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| ||||||||||| Sbjct 206270 ATGCAGATTTTTGTGAAGACACTCACAGGCAAGACGATCACCCTTGAGGTGGAACCGTCT 206329 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| | ||||| | ||||| ||| ||||| ||||||||||| || Sbjct 206330 GACACCATTGAAAATGTCAAGGCAAAGATTCAGGACAAAGAAGGTAT 206376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434894849168640