Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq156 89.7 4e-13 >seq156 Length=1397929 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || ||||| | || || |||||||| ||||| ||||| Sbjct 360080 GACAAAGAGGGAATTCCTCCCGATCAGCAGAGATTGATCTTTGCCGGCAAACAGTTGGAA 360139 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||||| || ||||||||||| |||||| |||| | |||||||| || Sbjct 360140 GATGGCCGTACCTTGTCGGACTACAACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTG 360199 Query 28003 CGTTTGCGTGGCGG 28016 ||| || | || || Sbjct 360200 CGTCTGAGAGGAGG 360213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || |||||||| | || |||||||| ||||| | || Sbjct 359852 GACAAAGAGGGAATTCCCCCAGATCAGCAACGTCTTATCTTTGCCGGCAAACAGCTTGAG 359911 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||||| || ||||||||||| |||||| |||| | |||||||| || Sbjct 359912 GATGGCCGTACCTTGTCGGACTACAACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTG 359971 Query 28003 CGTTTGCGTGGCGG 28016 ||| || | || || Sbjct 359972 CGTCTGAGAGGAGG 359985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || |||||||| | || |||||||| ||||| | || Sbjct 360308 GACAAAGAGGGAATTCCCCCAGATCAGCAACGTCTTATCTTTGCCGGCAAACAGCTTGAG 360367 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||||| || ||||||||||| |||||| |||| | |||||||| || Sbjct 360368 GATGGCCGTACCTTGTCGGACTACAACATCCAGAAAGAGTCCACTCTCCATTTGGTGCTG 360427 Query 28003 CGTTTGCGTGGCGG 28016 ||| || | || || Sbjct 360428 CGTCTGAGAGGAGG 360441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || |||||||| | || |||||||| ||||| | || Sbjct 360764 GACAAAGAGGGAATTCCCCCAGATCAGCAACGTCTTATCTTTGCCGGCAAACAGCTTGAA 360823 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||||||||| ||||||||||| |||||| || | ||| | || ||| Sbjct 360824 GATGGCCGTACCTTGTCCGACTACAACATCCAGAAAGAGTCAACCCTTCATCTAGTCTTG 360883 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 360884 CGTCTGCGTGGTGG 360897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355843611799764