Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq156 174 4e-38 seq170 158 3e-33 seq937 104 5e-17 >seq156 Length=1397929 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || |||||||| ||||| ||||| ||||| || ||||| | || || | Sbjct 357932 AAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAGAGTGTGCG 357873 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| |||||| || ||||| || | | || || || || || | ||| || Sbjct 357872 TCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGGATTCCCTC 357813 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||||||||||| |||||||||||| || |||||||| || ||||| || || Sbjct 357812 TTTGTCCTGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACCTCAAGGGT 357753 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || ||||||||||| || || | |||||| Sbjct 357752 GATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 357714 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | || || ||||| ||||| ||||||||||| || | | ||| || Sbjct 358624 AGTCTGAGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCGGACAAGGTTCTG 358565 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || ||||| ||||| || |||||||| | || || || || || | ||| || Sbjct 358564 CCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCCTCT 358505 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| |||||| || || ||||||||||| || || || | ||| Sbjct 358504 TTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGACGGCTCCACTTCCAATGTG 358445 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| ||||| ||||| | ||||||| Sbjct 358444 ATAGTCTTGCCTGTGAGGGTCTTCACAAAAATCTGCATT 358406 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||||||||| |||||||| || |||| | ||| | ||||| || ||||| Sbjct 359961 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 359902 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || |||||||| ||||| || || || |||| ||| || ||||| ||||| || Sbjct 359901 TTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATTTTG 359842 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || ||||||||||| || || || |||||||| || || || || Sbjct 359841 GCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACTTCTAGAGTGATGGTTTTGCCAGTC 359782 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 359781 AGGGTCTTGACGAAGATCTGCAT 359759 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||||||||| |||||||| || |||| | ||| | ||||| || ||||| Sbjct 360417 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 360358 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || |||||||| ||||| || || || |||| ||| || ||||| ||||| || Sbjct 360357 TTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATTTTG 360298 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || |||||||| || || || || |||||||| || || || || Sbjct 360297 GCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTC 360238 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 360237 AGGGTCTTGACGAAGATCTGCAT 360215 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||||||||| |||||||| || |||| | ||| | ||||| || ||||| Sbjct 359733 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 359674 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | | || || || ||||||| ||| || ||||| ||||| || Sbjct 359673 TTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTG 359614 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || |||||||| || || || || |||||||| || || || || Sbjct 359613 GCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTC 359554 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 359553 AGGGTCTTGACAAAGATCTGCAT 359531 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||||||||| |||||||| || |||| | ||| | |||||||||| ||| Sbjct 360189 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCTTCCAACTGT 360130 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | | || || || ||||||| ||| || ||||| ||||| || Sbjct 360129 TTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATTCCCTCTTTGTCTTGGATTTTG 360070 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || |||||||| || || || || |||||||| || || || || Sbjct 360069 GCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTC 360010 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 360009 AGGGTCTTGACGAAGATCTGCAT 359987 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||||||||| |||||||| || |||| | ||| | ||||| || ||||| Sbjct 360645 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 360586 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | | || || || ||||||| ||| || ||||| ||||| || Sbjct 360585 TTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTG 360526 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || ||||||||||| || || || |||||||| || || || || Sbjct 360525 GCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACTTCTAGAGTGATGGTTTTGCCAGTC 360466 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 360465 AGGGTCTTGACGAAGATCTGCAT 360443 >seq170 Length=1283570 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||||||||| ||||| || || || | || || | |||||| Sbjct 1121662 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCT 1121721 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || |||||||| || | ||||| |||||| Sbjct 1121722 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATCCCTTCTTTGTCC 1121781 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || ||||| || ||| ||||| || ||||| ||| Sbjct 1121782 TGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTTCCACCTCAAGGGTGATTGTC 1121841 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | |||||| Sbjct 1121842 TTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||||||||| ||||| || || || | || || | |||||| Sbjct 1115041 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCGGACAGAGTGCGGCCATCT 1115100 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| || |||||||||||||| || Sbjct 1115101 TCCAGCTGCTTGCCAGCAAAGATCAGACGTTGTTGGTCAGGGGG 1115144 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||||||||| ||||| || || || | || || | |||||| Sbjct 1114048 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCT 1114107 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| || ||||| || || || |||||||| || | |||| Sbjct 1114108 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 1114158 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||||||||| ||||| || || || | || || | |||||| Sbjct 1117511 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCT 1117570 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| || ||||| || || || |||||||| || | |||| Sbjct 1117571 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 1117621 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||||||||| ||||| || || || | || || | |||||| Sbjct 1120831 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCT 1120890 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| || ||||| || || || |||||||| || | |||| Sbjct 1120891 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 1120941 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||||||||| ||||| || || || | || || | |||||| Sbjct 1111804 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCT 1111863 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| || || || || || || |||||||| || | |||| Sbjct 1111864 TCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGGGGGATTCCT 1111914 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||||||||| ||||| || || || | || || | |||||| Sbjct 1118279 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCT 1118338 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| || || || || ||||| || Sbjct 1118339 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1118382 >seq937 Length=262530 Score = 104 bits (114), Expect = 5e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| |||||||| |||||| || || ||||| ||||||||||| ||| ||||| Sbjct 206373 CCTTCTTTGTCCTGAATCTTTGCCTTGACATTTTCAATGGTGTCAGACGGTTCCACCTCA 206314 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||||||||| || ||||| ||||| ||||| | ||||||||| Sbjct 206313 AGGGTGATCGTCTTGCCTGTGAGTGTCTTCACAAAAATCTGCATTTT 206267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159087662717180