Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq156 143 6e-29 seq4332 123 6e-23 seq170 102 2e-16 >seq156 Length=1397929 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||||||||| || ||||| || ||||||||||| |||| ||||||||| | | || | Sbjct 357932 AAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAGAGTGTGCG 357873 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | |||||| |||||||| || | | || || |||||||| || || || Sbjct 357872 TCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGGATTCCCTC 357813 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| ||||||||| ||||| ||| || ||||| || | ||||| || | || Sbjct 357812 TTTGTCCTGGATCTTTGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCACCTCAAGGGT 357753 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || | ||| || | ||| | ||||| Sbjct 357752 GATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 357714 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||| ||||| |||| ||||| || | ||| || | ||||| || ||||| Sbjct 359961 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 359902 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || |||||||| ||||| || || || ||||| || || ||||||||||| || Sbjct 359901 TTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATTTTG 359842 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || |||||||| || | ||||| |||| ||||| || ||||| ||| Sbjct 359841 GCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACTTCTAGAGTGATGGTTTTGCCAGTC 359782 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 359781 AGGGTCTTGACGAAGATCTGCAT 359759 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||||| ||||||||||| |||| || || |||| ||| ||||| Sbjct 358624 AGTCTGAGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCGGACAAGGTTCTG 358565 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || ||||| || || || |||||||| | || || || || || || || || Sbjct 358564 CCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCCTCT 358505 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| |||||| || |||||||| || | ||||| || || ||| Sbjct 358504 TTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGACGGCTCCACTTCCAATGTG 358445 Query 225676 ATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 358444 ATAGTCTTGCCTGT 358431 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||| ||||| |||| ||||| || | ||| || | ||||| || ||||| Sbjct 360417 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 360358 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || |||||||| ||||| || || || ||||| || || ||||||||||| || Sbjct 360357 TTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATTTTG 360298 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || |||||||| || | ||||| || | ||||| || ||||| ||| Sbjct 360297 GCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTC 360238 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 360237 AGGGTCTTGACGAAGATCTGCAT 360215 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| || || || || || ||||| |||| ||||| |||| ||| || Sbjct 360892 ACGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAAGGT 360833 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || || || |||||||| ||||| || || || ||||| || Sbjct 360832 ACGGCCATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGGGGAATTCC 360773 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| || |||||| || |||||||| || | ||||| || | Sbjct 360772 CTCTTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAG 360713 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| || ||||| |||| Sbjct 360712 AGTGATGGTTTTGCCAGTCA 360693 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||| ||||| |||| ||||| || | ||| || | |||||||| | ||| Sbjct 360189 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCTTCCAACTGT 360130 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | || || || ||||| ||||| || || ||||||||||| || Sbjct 360129 TTGCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATTCCCTCTTTGTCTTGGATTTTG 360070 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || |||||||| || | ||||| || | ||||| || ||||| ||| Sbjct 360069 GCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTC 360010 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 360009 AGGGTCTTGACGAAGATCTGCAT 359987 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||| ||||| |||| ||||| || | ||| || | ||||| || ||||| Sbjct 360645 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 360586 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | || || || || || ||||| || || ||||||||||| || Sbjct 360585 TTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTG 360526 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || |||||||| || | ||||| |||| ||||| || ||||| ||| Sbjct 360525 GCCTTCACGTTCTCAATGGTGTCAGATGGCTCCACTTCTAGAGTGATGGTTTTGCCAGTC 360466 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | ||||| Sbjct 360465 AGGGTCTTGACGAAGATCTGCAT 360443 Score = 111 bits (122), Expect = 4e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||| ||||| |||| ||||| || | ||| || | ||||| || ||||| Sbjct 359733 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCAAGCTGT 359674 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | || || || || || ||||| || || ||||||||||| || Sbjct 359673 TTGCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTG 359614 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || |||||||| || | ||||| || | ||||| || ||||| ||| Sbjct 359613 GCCTTCACGTTCTCAATGGTGTCCGATGGCTCCACTTCCAGAGTGATGGTTTTGCCAGTC 359554 Query 225691 A 225691 | Sbjct 359553 A 359553 >seq4332 Length=14117 Score = 123 bits (136), Expect = 6e-23 Identities = 135/178 (76%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 7554 ACTT-TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGC 7612 |||| || || |||||| | || || || || |||| |||||||| ||| | ||||||| Sbjct 204 ACTTCTATAATGTTATTGTAACTGCTCACGCTTTTGAAATGATTTTTTTTATAGTTATGC 263 Query 7613 CGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATA 7672 | |||| || || || ||||| |||||| | || |||||| | |||||||||||||||| Sbjct 264 CTATTATAATTGGTGGATTCGGGAATTGAATGGTACCTTTATTAATTGGTGCTCCTGATA 323 Query 7673 TGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 | ||||| | | || ||||||||||| ||| | || || |||||||| || || Sbjct 324 TAAGATTTCCTCGTATAAATAATATAAGTTTCTGACTTCTTCCCCCTTCCTTTTTACT 381 Score = 100 bits (110), Expect = 7e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || |||||||||||||||||||| || |||||||| | |||||||| ||||| || | Sbjct 774 TCTGGATGACCAAAAAATCAGAACAAGTGTTGATATAAAATAGGATCTCCTCCTCCCGCA 715 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || || || ||||| ||||||||||| | ||| ||||||| Sbjct 714 GGGTCGAAGAAGCTCGTATTAAAATTACGATCCGTTAAAA 675 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 371401 ATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGA 371460 |||||||| || ||||||||||| || ||||| |||| || ||||| || ||||| | | Sbjct 561 ATATTAAAAATAGTAGTAATAAAATTAATAGCACCTAAAATTGAAGACATCCCTGCTAAA 502 Query 371461 TGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAAC---TT 371517 |||||| ||| || |||||||| || ||| || || | |||||| || | Sbjct 501 TGTAAAGAAAAAATAGCTAAATCAACAGAAGTTCCTCCATG---TGCAATAGGACCTGAT 445 Query 371518 AACGGCGGGTAAACTGTTCAGCCGGTTC 371545 | || |||||||||||||| || |||| Sbjct 444 AGAGGAGGGTAAACTGTTCATCCTGTTC 417 >seq170 Length=1283570 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || ||||| ||||| |||| |||||| |||| || ||| | |||||| Sbjct 1115041 AGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTCGGACAGAGTGCGGCCATCT 1115100 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| ||||| ||||| || ||||||||||| || || || ||| Sbjct 1115101 TCCAGCTGCTTGCCAGCAAAGATCAGACGTTGTTGGTCAGGGGGGATGCCT 1115151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192465010046408