Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq284 122 1e-22 seq677 84.2 3e-11 >seq284 Length=917541 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||| ||| ||||| || |||||||| |||||||||||||| || | |||||| ||| | Sbjct 767118 CCAGATTTTCATTGACAATTCCATCGCTAGCAGCAAAAAAGGCCAGAACATGTGAAATGA 767059 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | ||| || | || |||| | | ||||| | | || ||||| | || |||| Sbjct 767058 AGTGTTTCTCTTCTGACTTCAGCTCTTCCCAGTGAGCAAGGTCCTTTGACAAGTCGACTT 766999 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 | || || |||||||| || ||||||||||| || ||||| | ||| |||||| || | Sbjct 766998 CCTCCGCAGTCCAAAAAGAGGCCTCTGCTTTCTTGTACATTTGCCAGATATCATGATACT 766939 Query 48703 GGATTGGGAAAATAACAAATCT 48724 |||||||| | |||||||| Sbjct 766938 CAATTGGGAAGACCACAAATCT 766917 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | ||| || || || | || || |||||||| |||||||||||| || || Sbjct 767770 ATCTTTGATGTATGTGTCGATGAGGAGGCTGTACATTTCACTGTGAATATTTTCCATAGC 767711 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 |||||||||||||| || || | || || |||| ||| ||||| | | |||||||| Sbjct 767710 AATCTGAAATCCGTAGAAGCAACGAGCCTCGGTGACCTGCACCTCTTTGCTGAATCGTTC 767651 Query 48521 AGCC 48524 | || Sbjct 767650 AACC 767647 >seq677 Length=433858 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 77118 TTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGT 77177 || || || || || || || || | ||||| || ||||| || || ||||| || | Sbjct 168870 TTGACAATCTGGAACTCCCCTGAGAGAACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCC 168811 Query 77178 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 || | ||| ||||||||||||||||| ||||| || ||||| |||||||| || || Sbjct 168810 TCAATAGACTCATTGTTTCCCAAAATCTGAGCTGTCGAAGCGGTTGGCATGGGGGC 168755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694631183684480