Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq284 120 4e-22 seq677 84.2 3e-11 >seq284 Length=917541 Score = 120 bits (132), Expect = 4e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| ||||| || |||||||| |||||||||||||| |||| |||||| ||| || Sbjct 767117 CAGATTTTCATTGACAATTCCATCGCTAGCAGCAAAAAAGGCCAGAACATGTGAAATGAA 767058 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | ||| || || | |||| | | ||||| | | || ||||| | || ||||| Sbjct 767057 GTGTTTCTCTTCTGACTTCAGCTCTTCCCAGTGAGCAAGGTCCTTTGACAAGTCGACTTC 766998 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 || || ||||| || || ||||||||||| || ||||| | ||| |||||| |||| | Sbjct 766997 CTCCGCAGTCCAAAAAGAGGCCTCTGCTTTCTTGTACATTTGCCAGATATCATGATACTC 766938 Query 47193 GATCGGAAAAATAACAAATCT 47213 || || || | |||||||| Sbjct 766937 AATTGGGAAGACCACAAATCT 766917 >seq677 Length=433858 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 75713 TTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGT 75772 || ||||| || || || || || | ||||| || ||||| || || ||||| || | Sbjct 168870 TTGACAATCTGGAACTCCCCTGAGAGAACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCC 168811 Query 75773 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 || | ||| ||||||||||||||||| ||||| || ||||| || ||||| || || Sbjct 168810 TCAATAGACTCATTGTTTCCCAAAATCTGAGCTGTCGAAGCGGTTGGCATGGGGGC 168755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712895794602240