Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq156 138 8e-28 seq170 114 9e-21 >seq156 Length=1397929 Score = 138 bits (152), Expect = 8e-28 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || ||||||| |||||||||||| ||| || || ||||| |||||||| | | Sbjct 357940 CCTCCCCTAAGTCTCAGCACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCTGAG 357881 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || |||| |||||| || || || ||||| | ||||||||| | || Sbjct 357880 AGTGTGCGTCCATCTTCCAACTGCTTTCCAGCGAAAATCAACCTCTGCTGATCGGGCGGG 357821 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || || || ||| ||||| ||| |||| || | || ||||| | | ||||| Sbjct 357820 ATTCCCTCTTTGTCCTGGATCTT-TGCTTTCACGTTTTCAATTGTGTCAGACGGCTCCAC 357762 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATGAA 44349 ||| | || || ||||| || ||||| ||||| |||||||| ||||||||| |||| Sbjct 357761 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATGATGCCTCTGAA 357702 Query 44350 AAT 44352 ||| Sbjct 357701 AAT 357699 Score = 113 bits (124), Expect = 3e-20 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||||| || || ||| ||| || ||||||||||| || Sbjct 359761 CATACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 359702 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || || ||||| || |||||||||||||| | ||||||||||| Sbjct 359701 CGACAAGGTACGGC-CATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTG 359643 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | || || || || || || |||| | |||| | |||||||| | | Sbjct 359642 GAGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTCTCAATGGTGTCCGATGGC 359584 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||| || || || || || || |||||||| || ||||| ||||| Sbjct 359583 TCCACTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 359531 Score = 113 bits (124), Expect = 3e-20 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||||| || || ||| ||| || ||||||||||| || Sbjct 360217 CATACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 360158 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || |||| ||| || |||||||||||||| | ||||||||| | Sbjct 360157 CGACAAGGTACGGC-CATCTTCCAACTGTTTGCCGGCAAAGATCAATCTCTGCTGATCGG 360099 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | || || || || || || |||| | |||| | |||||||| | | Sbjct 360098 GAGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTCTCAATGGTGTCCGATGGC 360040 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||| || || || || || || |||||||| |||||||| ||||| Sbjct 360039 TCCACTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359987 Score = 113 bits (124), Expect = 3e-20 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||||| || || ||| ||| || ||||||||||| || Sbjct 360673 CATACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 360614 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || || ||||| || |||||||||||||| | ||||||||||| Sbjct 360613 CGACAAGGTACGGC-CATCCTCAAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGATCTG 360555 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | || || || || || || |||| | |||| | |||||||| | | Sbjct 360554 GAGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTCTCAATGGTGTCAGATGGC 360496 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | || || || || || || |||||||| |||||||| ||||| Sbjct 360495 TCCACTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360443 Score = 109 bits (120), Expect = 4e-19 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||||| || || ||| ||| || ||||||||||| || Sbjct 360445 CATACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 360386 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || || ||||| || ||||||||||| | ||| |||||||||| Sbjct 360385 CGACAAGGTACGGC-CATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTG 360327 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | || || || || || || |||| | |||| | |||||||| | | Sbjct 360326 GGGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTCTCAATGGTGTCCGATGGC 360268 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||| || || || || || || |||||||| |||||||| ||||| Sbjct 360267 TCCACTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 360215 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || ||||| ||||| | ||||| || || ||| || || |||||||| || |||| | Sbjct 358633 CCTCCTCTGAGTCTGAGCACCAAATGGAGTGTGGATTCTTTCTGGATGTTATAGTCGGAC 358574 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || | || || ||||| || ||||||||||| | | ||||||||||| || Sbjct 358573 AAGGTTCTGC-CATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 358515 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | || || || ||| ||||| |||| | ||| | |||||||| | | |||| Sbjct 358514 GATTCCCTCTTTGTCCTGGATCTTA-GCTTTCACATTCTCAATGGTGTCAGACGGCTCCA 358456 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| || || ||||| || |||||||||||||| || || ||||| Sbjct 358455 CTTCCAATGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAAATCTGCAT 358407 Score = 104 bits (114), Expect = 2e-17 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||||| || || ||| ||| || ||||||||||| || Sbjct 359989 CATACCTCCTCTCAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 359930 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || || ||||| || ||||||||||| | ||| |||||||||| Sbjct 359929 CGACAAGGTACGGC-CATCCTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTG 359871 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | || || || || || || |||| | |||| | |||||||| | | Sbjct 359870 GGGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTCTCAATGGTGTCAGATGGC 359812 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | || || || || || || |||||||| |||||||| ||||| Sbjct 359811 TCCACTTCTAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 359759 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||| | ||| || || ||||| || ||| || ||||||||||| |||| Sbjct 360899 TTCCACCACGCAGACGCAAGACTAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGG 360840 Query 44169 -CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || | || | || || ||||| || ||||||||||| | ||| |||||||||| Sbjct 360839 ACAAGGTACGGC-CATCTTCAAGCTGTTTGCCGGCAAAGATAAGACGTTGCTGATCTGGG 360781 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || || || || || || |||| | |||| | |||||||| | | || Sbjct 360780 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTCTCAATGGTGTCCGATGGCTC 360722 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| || || || || || || |||||||| || ||||| ||||| Sbjct 360721 CACTTCCAGAGTGATGGTTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 360671 >seq170 Length=1283570 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | | ||| || ||||| ||| ||| || ||||| ||||| || Sbjct 1121643 CATGCCTCCTCGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGGATATTGTAGTC 1121702 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||||| ||||||||| || | Sbjct 1121703 TGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 1121762 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| |||||| ||||| | | || ||||| | | ||| Sbjct 1121763 GGGGATCCCTTCTTTGTCCTGTATCTTGGCCTTCACATTCTCAATAGTGTCCGATGGTTC 1121822 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| | || || ||||| || || || || ||||| ||||| ||||| Sbjct 1121823 CACCTCAAGGGTGATTGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCAT 1121873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359971393856844