Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aplysia_20californica_20[refseq_20GCF_5F000002075.1_202013-05-15] 4,332 sequences; 927,310,431 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq156 174 4e-38 seq170 150 4e-31 seq937 107 5e-18 >seq156 Length=1397929 Score = 174 bits (192), Expect = 4e-38 Identities = 172/220 (78%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || |||||||| || || ||||| | || ||||| || ||| Sbjct 358410 CAGATTTTTGTGAAGACCCTCACAGGCAAGACTATCACATTGGAAGTGGAGCCGTCTGAC 358469 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||| ||||||||||| |||||||| || || ||||| Sbjct 358470 ACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAAGAGGGAATCCCCCCAGATCAGCAG 358529 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | |||||||| ||||| |||||||| || ||||| || || |||| |||| |||||| | Sbjct 358530 AGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCAGAAC-CTTGTCCGACTATAACAT 358588 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| |||||||| ||||| ||| | || | ||||||||| Sbjct 358589 CCAGAAAGAATCCACACTCCATTTGGTGCTCAGACTCAGA 358628 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||||| |||||||| || ||| Sbjct 357717 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAGCCGTCTGAC 357776 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| |||||| ||||||||||| |||||||| || || ||||| Sbjct 357777 ACAATTGAAAACGTGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCGCCCGATCAGCAG 357836 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| ||||| ||| | ||||||||| | || || | ||||| || || Sbjct 357837 AGGTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGACGCACACTCTCAGATTACAATATC 357896 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || |||||||| ||||| || || || ||||||| || Sbjct 357897 CAGAAAGAATCCACACTTCACCTGGTGCTGAGACTTAG 357934 >seq170 Length=1283570 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || |||||||| ||||||||| || ||| Sbjct 1121870 CAGATCTTTGTGAAAACACTTACTGGCAAGACAATCACCCTTGAGGTGGAACCATCGGAC 1121811 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| |||||||||||||| ||||| || |||||||| Sbjct 1121810 ACTATTGAGAATGTGAAGGCCAAGATACAGGACAAAGAAGGGATCCCCCCTGACCAGCAG 1121751 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | ||||| | || || || || Sbjct 1121750 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCAGACTACAATATC 1121691 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || |||||||| Sbjct 1121690 CAGAAAGAGTCCACCCTTCATCTTGT 1121665 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || ||||| || || ||||| || || || || ||||||| Sbjct 1117491 CAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACACTTGAAGTAGAGCCCTCAGAC 1117432 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||||| ||||| || || |||||||||||||||||||| || Sbjct 1117431 ACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAAGAAGGTAT 1117388 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || ||||| || || ||||| || || || || ||||||| Sbjct 1121642 CAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACACTTGAAGTAGAGCCCTCAGAC 1121583 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||||| ||||| || || |||||||||||||||||||| || Sbjct 1121582 ACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAAGAAGGTAT 1121539 >seq937 Length=262530 Score = 107 bits (118), Expect = 5e-18 Identities = 92/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||| ||||| || |||||||| || ||||||||||| ||||||||| Sbjct 206267 AAAATGC---AGATTTTTGTGAAGACACTCACAGGCAAGACGATCACCCTTGAGGTGGAA 206323 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 || |||||||| || || ||||| ||||||||||||||||||||| || Sbjct 206324 CCGTCTGACACCATTGAAAATGTCAAGGCAAAGATTCAGGACAAAGAAGGTAT 206376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203664388404408