Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq33510 111 2e-19 >seq33510 Length=29102 Score = 111 bits (122), Expect = 2e-19 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || || |||||||| ||||| ||||| || || | ||||||||| ||| |||||||| Sbjct 26573 TCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 26632 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| || ||||||||||| ||||| || || || ||||| || | ||||| || Sbjct 26633 AGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGGCT 26692 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | ||||| |||| | || |||| | ||||| ||| | |||| ||||| Sbjct 26693 ACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGGCC 26752 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT--TCTCT 16453 || | |||| | || ||||| ||||| || || |||| ||||| Sbjct 26753 TTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAATAATTGGTCTCT 26802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 16464 TATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGG 16523 |||| | ||||| || || || ||||||||||||||||||||||| || || || || | Sbjct 27074 TATCCTTGATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTG 27133 Query 16524 CTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 | ||||| ||||| |||||||| | |||||| Sbjct 27134 CAATCTGGAATCCGTAGAAGCACCTAGCCTC 27164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510566685883240