Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9979 96.9 3e-15 seq112321 87.8 2e-12 seq60492 82.4 6e-11 >seq9979 Length=2718 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | || || | ||| | |||||||| || || ||||| ||||| | Sbjct 1894 TCCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1953 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 | ||| ||||||| ||||| || || ||| | ||||| | ||||||||| ||| Sbjct 1954 TAACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 2013 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||| || ||| || | ||| || |||| || || Sbjct 2014 AATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 2073 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | ||||||||||| || ||||| Sbjct 2074 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||||||||| || || ||||| ||||| | | ||| ||||| Sbjct 2366 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 2425 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || ||||| || ||| | || || | ||||||||| || | ||||||||||| Sbjct 2426 TCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 2485 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | ||| || |||| || || ||| | ||| |||||| Sbjct 2486 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTC 2545 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||||||||||| || ||||| Sbjct 2546 TTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | | ||| | ||||| || || || || Sbjct 2153 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTGCTTTCCA 2212 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | ||||||||| ||| | ||||||||||| ||| || ||| Sbjct 2213 GCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2272 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| || || ||| | ||| ||||||||||| || | ||| Sbjct 2273 ACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGAGTT 2332 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 2333 TTGACAAAGATCTGCAT 2349 >seq112321 Length=3025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | | ||| ||||||| || ||||| || Sbjct 2803 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCA 2744 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| || | ||||||||||| ||| || ||| Sbjct 2743 GCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 2684 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| || || ||| | ||| ||||||||||| || | ||| Sbjct 2683 ACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGTGTT 2624 Query 21159 TTGACAAATATTTGCATTTTG 21179 |||||||| || ||||| ||| Sbjct 2623 TTGACAAAGATCTGCATGTTG 2603 >seq60492 Length=3139 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | || || | ||| | |||||||| || || ||||| ||||| | Sbjct 1512 TCCACCACGGAGACGAAGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 1453 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 | ||| ||||||| || || || || ||| | ||||| | |||||| || ||| Sbjct 1452 TAACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGG 1393 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| ||| || ||| || | ||| || |||| || || Sbjct 1392 AATACCCTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 1333 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | ||||||||||| || ||||| Sbjct 1332 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421576766717612