Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq33510 140 3e-28 seq112321 113 5e-20 seq60492 107 2e-18 seq9979 102 8e-17 seq37278 87.8 2e-12 >seq33510 Length=29102 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || |||||| | |||| || | ||||| || | || | |||||| ||| | |||||| Sbjct 28061 GACAACCCCAGGAGGTTTGTTCTCTTCCCTATCGAGTATCAGGACATCTGGAGAATGTAC 28002 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||| || || || |||||||| | |||||| ||||| || ||||| || | || Sbjct 28001 AAGAAGGCTGAAGCTTCCTTCTGGACAGCCGAGGAAGTGGATCTCTCCAAAGATATGAAG 27942 Query 116711 GACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||||| |||| ||| ||| |||| || || | || || || || || || || Sbjct 27941 GACTGGGAGTCGCTGAAACCGCAA-GAGCAGCACTTTGTTAAACATGTTCTAGCTTTCTT 27883 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||| ||||| ||||| ||||| |||||||||||||| Sbjct 27882 CGCAGCCAGTGACGGTATCGTTAACGAGAATCTGGT 27847 Score = 132 bits (146), Expect = 5e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || || |||||||| || || || || || |||||||||| ||||||||| Sbjct 26793 TTATTCAATGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCCGACTGGGCGCTGAAG 26734 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||||| | || || ||| | | |||| ||| |||| ||||| || || |||||| Sbjct 26733 TGGATCGACCACAAAGTAGCCAGGTACAGCGAACGCGTGGTAGCCTTTGCCGCGGTCGAG 26674 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| |||| || ||||| || || || || || |||||||||||||| || | ||| Sbjct 26673 GGCATCTTTTTCTCGGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATTAATG 26614 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || ||||| || ||| ||| || |||||| |||||| |||| Sbjct 26613 CCAGGCCTTACATTCTCCAATGAACTCATCAGCAGGGATGAGG 26571 >seq112321 Length=3025 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| || || ||||| ||||||||| |||| || ||| | Sbjct 2604 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTCGAAGTAGAACCT 2663 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| ||||| | ||||| || || || || | ||| Sbjct 2664 AGTGACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGAC 2723 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| || ||||| || || |||| | || | ||||||| Sbjct 2724 CAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTAC 2783 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| ||| |||| || ||||| || Sbjct 2784 AACATCCAGAAAGAGTCCACACTCCATCTTGT 2815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 2835 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2894 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || || | |||||| Sbjct 2895 GACACCATTGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2954 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| || ||||| || || |||| | || | |||||||||| Sbjct 2955 CAGCGTCTCATTTTCGCTGGTAAACAACTCGAGGACGGAAGAACATTATCCGACTACAAC 3014 Query 40870 ATCCAGAAGGA 40880 |||||||| || Sbjct 3015 ATCCAGAAAGA 3025 >seq60492 Length=3139 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 1057 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1116 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| ||||| || || | || ||| Sbjct 1117 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCACCAGATCAG 1176 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || ||||| || || |||| | || | |||||||||| Sbjct 1177 CAACGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACGTTATCCGACTACAAC 1236 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| | || || ||||| || Sbjct 1237 ATCCAGAAAGAGTCAACACTCCATCTTGT 1265 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 1285 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1344 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| ||||| || ||| | || ||| Sbjct 1345 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 1404 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || || || |||| | || | |||||||||| Sbjct 1405 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGAACGTTATCCGACTACAAC 1464 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 1465 ATCCAGAAAGAGTCCACACTCCATCTTGT 1493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 142 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 201 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || || | || ||| Sbjct 202 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 261 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || || || |||| | || | |||||||||| Sbjct 262 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGGACGTTATCCGACTACAAC 321 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 322 ATCCAGAAAGAGTCCACTCTCCATCTTGT 350 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 370 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 429 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || ||| | || ||| Sbjct 430 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGATCAG 489 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || || || || | | || | |||||||||| Sbjct 490 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGAAGGACGTTATCCGACTACAAC 549 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 550 ATCCAGAAAGAGTCCACACTCCATCTTGT 578 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 829 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 888 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || || | ||||| Sbjct 889 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAA 948 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || || || || || | | || | |||||||||| Sbjct 949 CAGCGGCTCATCTTTGCTGGTAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 1008 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 1009 ATCCAGAAAGAGTCCACACTCCATCTTGT 1037 >seq9979 Length=2718 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 2121 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2062 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || ||| | |||||| Sbjct 2061 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2002 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || |||| | || | |||||||||| Sbjct 2001 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 1942 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 1941 ATCCAGAAAGAGTCCACACTCCATCTTGT 1913 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 2577 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGT 2518 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || || | |||||| Sbjct 2517 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2458 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || ||||| || || |||| | || | |||||||||| Sbjct 2457 CAGCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 2398 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 2397 ATCCAGAAAGAGTCCACTCTCCATCTTGT 2369 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| |||| || ||| | | Sbjct 2349 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2290 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || ||| | |||||| Sbjct 2289 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2230 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || || || || | | || | |||||||||| Sbjct 2229 CAGCGTCTTATCTTTGCTGGAAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 2170 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 2169 ATCCAGAAAGAGTCCACACTCCATCTTGT 2141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || || ||| | |||||||| || ||||||| ||| || ||||| || || Sbjct 2712 GACAAGGAAGGTATTCCCCCAGACCAGCAGCGTCTCATCTTCGCTGGTAAACAACTCGAG 2653 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| | || | |||||||||||||||||||||| |||| || ||||| || Sbjct 2652 GACGGAAGGACGTTATCCGACTACAACATCCAGAAGGAGTCCACACTCCATCTTGT 2597 >seq37278 Length=37914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| ||||| ||| | || || || || || |||||||| || |||||||| || || Sbjct 4843 CCACTTCATATCTCACATTCTAGCTTTCTTTGCGGCCAGCGATGGAATCGTCAATGAAAA 4902 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 ||||| ||| | || |||||| || ||||| | || || | ||||| |||||||| Sbjct 4903 CCTGGTGGAGAGATTTAGTCAGGAAGTTCAGGTTACGGAAGCTAGATGCTTTTACGGCTT 4962 Query 116860 TCAGATCGCCATGGAG 116875 |||||| || |||||| Sbjct 4963 TCAGATAGCTATGGAG 4978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514365179094320