Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq8964 127 3e-24 seq48055 120 5e-22 seq45117 109 8e-19 >seq8964 Length=41004 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || |||| || || ||||| |||||| | || ||||| || Sbjct 1384 ATGCAAATTATTGTGAAAACACGTACTGGTAAAACAATAACTCTGGAAGTTGAACCATCA 1443 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| || ||||| || |||||||| || ||||| || || ||||||||| Sbjct 1444 GATTCCATTGAAAACGTAAAATCTAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAA 1503 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| ||| |||||||| ||||| ||||| || | ||||| | || |||||| Sbjct 1504 CAGCGGCCTATATTTGCAGGTAAACAGTTAGAACATGGAAGAACACTTTCTGACTATAAT 1563 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || |||||| | || ||||| || |||||||||| Sbjct 1564 ATTCAGAAGGAGAGCACCTTGCATCTTGTCTTACGACTAAGAGGTGGTAT 1613 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||| |||| ||| | || |||||||| || ||||| ||| || | || ||||| | Sbjct 630 CAATGAAAATTTTTGTGAAAACACTAACTGGTAAAACAATACCTCTGGAAGTTGAACCGT 689 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| || ||||| || |||||||| ||| |||| || || ||||||| Sbjct 690 CAGATACCATTGAAAACGTAAAATCTAAGATTCAAGACAAAAAAGGAATTCCTCCTGATC 749 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| ||||||| |||||||| ||||||||||| || |||| | |||| | Sbjct 750 AACAGCGGCTTATCTTTGCAGGTAAACAATTAGAAAATGACAAAACACTCTCTAATTACA 809 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTAC 124752 | ||| |||||| ||| | |||||||| |||| Sbjct 810 ACATTTGTAAAGAAAGCACTCTTCATTTGGTGTTAC 845 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||||| | | ||||| ||| || | || ||||| | Sbjct 860 ATGCAAATTTTAGTGAAAACACTTAGTGATAAAACAATATCTCTGGAAGTTGAACCGTCA 919 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || ||||| || |||||||| ||||||| || || ||||||||| Sbjct 920 GATACAATTGAAAACGTAAAATTTAAGATTCAAGACGAAGAAGGAATTCCTCCTGATCAA 979 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||| |||||||| ||||| ||||| ||| |||| | |||| ||| Sbjct 980 CAGCTTTTTATCTTTGCAGGTAAACAGTTAGAAGATGACAAAACACTTTCTAATTACAAT 1039 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| |||||| ||| | ||||||| Sbjct 1040 ATTTGTAAAGAAAGCACTCTTTATTTGGT 1068 >seq48055 Length=12036 Score = 120 bits (132), Expect = 5e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||||| || || || || || ||||| |||||| | || ||| | | Sbjct 1500 ATGCAAATATTTATGAAAACTCTTACTGGTAAAACAATAACTCTGGAAGTTGTACCGTCG 1441 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| |||||||| ||||| || || ||||||||| Sbjct 1440 GAAACCATTGATAACGTAAAATCAAAAATCCAAGATAAGGAAGGAATTCCTCCTGATCAA 1381 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| ||||||||||||| || || ||||| ||| ||||| | || |||||| Sbjct 1380 CAGAGGATTATTTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTGTCTGACTATAAT 1321 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTAC 124752 | || || || ||| ||||| | || |||| Sbjct 1320 GTACAGAACGAGAGCACTCTGCATCTTGTCTTAC 1287 >seq45117 Length=16876 Score = 109 bits (120), Expect = 8e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATA-AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||| |||| | || ||| | || || ||||| ||| | | || ||||| | Sbjct 7652 ATGCAAAT-TTTAGAGAAAACAATTACTGGTAAAACAATATCCCTGGAAGTTGAACCGTC 7710 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| | ||| |||| | |||||| || || |||||||| Sbjct 7711 AGATACCATTGAAAATGTAAAAGCTATGATTGAAGACAGAGAAGGAATTCCTCCTGATCA 7770 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| |||||||| ||||| ||||| ||| | ||||| | ||||| || Sbjct 7771 ACAGAGGCTTATCTTTGCAGGTAAACAGTTAGAAGATGGAAGAACACTTTCTGATTACAA 7830 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||| || || ||| | || ||||| |||| ||| ||| ||||| ||| || Sbjct 7831 TATTTGTAAGGAGAGCACTGTTCAGTTGGTGTTACTGTTAAAAGGAGGTATGCAAATTT 7889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754203765577600