Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq60492 132 4e-26 seq9979 127 2e-24 seq112321 123 2e-23 >seq60492 Length=3139 Score = 132 bits (146), Expect = 4e-26 Identities = 157/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| |||||||| || |||||||| ||| | || | ||||| | Sbjct 1264 CAAGATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTA 1205 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| |||||| |||||||||| |||||||| || || || ||||||||||| | Sbjct 1204 GTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGA 1145 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | |||| |||||| | || | || ||||| | ||| | || ||| Sbjct 1144 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCTTG 1086 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||||||| ||||| |||||||| Sbjct 1085 CCAGTCAGAGTTTTGACAAAGATCTGCAT 1057 Score = 127 bits (140), Expect = 2e-24 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| |||||||| || |||||||| ||| | || | ||||||| Sbjct 1492 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGA 1433 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || || ||||| |||| |||||||||||||| || || || ||||||||||| | Sbjct 1432 GTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGA 1373 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | |||| |||||| | || | || ||||| | ||| | || ||| Sbjct 1372 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCTTG 1314 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||||||| ||||| |||||||| Sbjct 1313 CCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 123 bits (136), Expect = 2e-23 Identities = 155/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| |||||||| || |||||||| ||| | || | |||||||| Sbjct 577 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCCTCGA 518 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || || ||||| |||| |||||||||||||| || || || || |||||||| | Sbjct 517 GTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGA 458 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | |||| |||||| | || | || ||||| | ||| | || ||| Sbjct 457 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCTTG 399 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| |||||||| Sbjct 398 CCAGTCAGGGTTTTGACAAAGATCTGCAT 370 Score = 118 bits (130), Expect = 9e-22 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| || |||||||| ||| | || | ||||||| Sbjct 349 CAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGA 290 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || || ||||| |||| |||||||||||||| || || || || |||||||| | Sbjct 289 GTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGA 230 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | |||| |||||| | || | || ||||| | ||| | || ||| Sbjct 229 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCTTG 171 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||||||| ||||| |||||||| Sbjct 170 CCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| |||||||| || |||||||| ||| | || | ||||| | Sbjct 121 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTA 62 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 | ||||| |||||| ||||||||||||||||||| || || || || |||||||| Sbjct 61 GTTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTC 7 >seq9979 Length=2718 Score = 127 bits (140), Expect = 2e-24 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| |||||||| || |||||||| ||| | || | ||||||| Sbjct 1914 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGA 1973 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| |||||||| |||| ||||||||||| || || || || || |||||||| | Sbjct 1974 GCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGA 2033 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | |||| |||||| | || | || ||||| | ||| | || ||| Sbjct 2034 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCTTG 2092 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||||||| ||||| |||||||| Sbjct 2093 CCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 127 bits (140), Expect = 2e-24 Identities = 156/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTC 118588 |||| |||| ||| |||||||| || |||||||| ||| ||| || | | |||||| Sbjct 2142 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG--ATAATGTTCTTCCATCCTC 2199 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| || |||||||| |||| ||||||||||| || || || || || |||||||| Sbjct 2200 GAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTG 2259 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| |||||| | || || |||| ||| | || || Sbjct 2260 GATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTT 2319 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||||||||| ||||| |||||||| Sbjct 2320 GCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 116 bits (128), Expect = 3e-21 Identities = 156/211 (74%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTC 118588 |||| |||| || |||||||| || |||||||| ||| ||| || | | ||||| Sbjct 2370 CAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGG--ATAATGTTCTTCCGTCCTC 2427 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| ||||| |||||||||||||||| || || || || || |||||||| Sbjct 2428 TAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTG 2487 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| ||| || | |||| |||||| | || | || || || | ||| | || | Sbjct 2488 GATTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACTTCAAGGGTGATGGTCT 2546 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||||||||| ||||| |||||||| Sbjct 2547 TGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| ||||| || || |||||||| ||| | || | ||||||| Sbjct 2598 CAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGA 2657 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 | ||||| |||||| |||||||||||||||| || || || || || |||||||| Sbjct 2658 GTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTC 2712 >seq112321 Length=3025 Score = 123 bits (136), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTC 118588 |||| |||| ||| |||||||| || |||||||| ||| ||| || | | ||||| Sbjct 2814 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG--ATAATGTTCTTCCGTCCTC 2757 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| |||||| |||||||||||||||| || || || || || |||||||| Sbjct 2756 TAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTG 2697 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| |||||| | || || |||| ||| | || || Sbjct 2696 GATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTT 2637 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| ||||| ||||| ||||||||| Sbjct 2636 GCCAGTCAGTGTTTTGACAAAGATCTGCATG 2606 Score = 113 bits (124), Expect = 4e-20 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGT 118605 ||||| || |||||||| ||| ||| || | | |||||||| ||||| |||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGG--ATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGA 2968 Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 | |||||||||||||| || || || || || |||||||| ||||| ||| || | Sbjct 2967 AAATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACAT 2908 Query 118666 GTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 || | |||||| | || | || ||||| | ||| | || ||||| ||||||||||| Sbjct 2907 TCTCAATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 2849 Query 118725 ACAAAAATCTGCAT 118738 ||||| |||||||| Sbjct 2848 ACAAAGATCTGCAT 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433129265948044