Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq45117 98.7 1e-15 seq48055 93.3 6e-14 seq8964 89.7 8e-13 >seq45117 Length=16876 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 ||||| | | ||| |||||||| | ||| ||| ||| | ||||| |||| ||||| Sbjct 6962 CCTCTGCGCCGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAAGT 6903 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 |||||| ||| ||||| ||| | || ||||| || | | || ||||||||||||||| Sbjct 6902 GTTCTGTCATCTTCTAAATGTCTACCTGCAAATATAAGCCCCTGTTGATCCGGAGGAATT 6843 Query 146174 CCTTCTTTATCTTG 146187 |||||||| ||||| Sbjct 6842 CCTTCTTTGTCTTG 6829 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/224 (67%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 ||||| | | ||| |||||||| | ||| ||| ||| | ||||| |||| |||| Sbjct 6278 CCTCTGCGCCGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAATT 6219 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 |||||| ||| ||||| ||| | || | ||| || | | || ||||||||||||||| Sbjct 6218 GTTCTGTCATCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATT 6159 Query 146174 CCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCT 146233 |||||||| ||||| |||||||| ||| ||||| Sbjct 6158 CCTTCTTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCA 6099 Query 146234 AGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||||||||||| || | |||||| | || |||||||| Sbjct 6098 AGAGATATTGTTTTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6055 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 ||||| | | ||| |||||||| | ||| ||| ||||| ||||| ||||| ||||| Sbjct 6050 CCTCTGCGCCGTAACACCAAATGAAGAGTGCTTTCATTAGAAATATTGTAATCAGAAAGT 5991 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 |||| ||| ||||| | ||| | ||||| || | || || ||||| ||| ||||| Sbjct 5990 CTTCTTTCATCTTCTAACTTTTTGTCTGCAAAGATAAGCCTCTGGTGATCAGGAAGAATT 5931 Query 146174 CCTTCTTTATCTTG 146187 |||||||| ||||| Sbjct 5930 CCTTCTTTGTCTTG 5917 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||| ||||| || | ||| || ||| | ||||| ||||| ||||| ||||| | ||| Sbjct 7864 TAACACCAACTGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTCTTCCATC 7805 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||| ||||| || ||||| || | || || ||||| ||||||||||||||| | || Sbjct 7804 TTCTAACTGTTTACCTGCAAAGATAAGCCTCTGTTGATCAGGAGGAATTCCTTCTCTGTC 7745 Query 146185 TT 146186 || Sbjct 7744 TT 7743 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 ||||| | | ||| |||||||| | ||| ||| ||| | ||||| |||| ||||| Sbjct 6506 CCTCTGCGCCGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAAGT 6447 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 ||| || ||| ||||| ||| | || | ||| | | | || ||||||||||||||| Sbjct 6446 GTTTTGTCATCTTCTAACTGTCTACCTGTAAAGAGAAGCCCCTGTTGATCCGGAGGAATT 6387 Query 146174 CCTTCTTTATCTTG 146187 |||||||| ||||| Sbjct 6386 CCTTCTTTGTCTTG 6373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 ||||| | | ||| |||||||| | ||| ||| ||| | ||||| |||| ||||| Sbjct 7190 CCTCTGCGCCGTAACACCAAATGAAGAGTGCTTTCATTACAAATATTGTAATTAGAAAGT 7131 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 |||||| ||| ||||| ||| | || | ||| | | || ||||||||||||||| Sbjct 7130 GTTCTGTCATCTTCTAAATGTCTACCTGTAAAGAGAAGCACCTGTTGATCCGGAGGAATT 7071 Query 146174 CCTTCTTTATCTTG 146187 |||||||| ||||| Sbjct 7070 CCTTCTTTGTCTTG 7057 >seq48055 Length=12036 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 146056 TCTAAGTCTTAATACCAAATGTAAAGTAGATTCTT--TAGATATATTATAATCTGAAAGA 146113 ||||| ||||| ||||||| ||| | |||| || | ||||| ||||| ||||| Sbjct 1507 TCTAATCCTTAACACCAAAT--AAATAATGCTCTTCTTACAAATATTGTAATCAGAAAGT 1564 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 ||||| | ||| |||| |||| || |||||||| | | | |||||||| ||||||||| Sbjct 1565 GTTCTTCCATCTGCTAACTGTTCGCCTGCAAAAATAATTTTCTGCTGATCAGGAGGAATT 1624 Query 146174 CCTTCTTTATCTTG 146187 ||||| || ||||| Sbjct 1625 CCTTCCTTGTCTTG 1638 >seq8964 Length=41004 Score = 89.7 bits (98), Expect = 8e-13 Identities = 150/225 (67%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 |||||| | ||| |||||||| | ||| ||||||| | || || |||| || || Sbjct 855 CCTCTAGGCAGTAACACCAAATGAAGAGTGCTTTCTTTACAAATGTTGTAATTAGAGAGT 796 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 ||| || || ||||||||||| || ||||| || | | || ||||| ||||||||| Sbjct 795 GTTTTGTCATTTTCTAATTGTTTACCTGCAAAGATAAGCCGCTGTTGATCAGGAGGAATT 736 Query 146174 CCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCT 146233 |||| ||| ||||| |||||||| ||| ||||| Sbjct 735 CCTTTTTTGTCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCC 676 Query 146234 AGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || | ||||||||||| |||| |||||| | || |||| |||| Sbjct 675 AGAGGTATTGTTTTACCAGTTAGTGTTTTCACAAAAATTTTCATT 631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||||| | ||| ||||||| | ||||| |||| ||||| ||| || ||| ||| Sbjct 1068 ACCAAATAAAGAGTGCTTTCTTTACAAATATTGTAATTAGAAAGTGTTTTGTCATCTTCT 1009 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| || ||||| || || || ||||| |||||||||||||||| ||||| Sbjct 1008 AACTGTTTACCTGCAAAGATAAAAAGCTGTTGATCAGGAGGAATTCCTTCTTCGTCTTG 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742293939933440