Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq9979 91.5 1e-13 seq112321 87.8 1e-12 seq60492 87.8 1e-12 >seq9979 Length=2718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| | | | |||| || | |||||| || || || Sbjct 1931 TCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTTCCAGCAAAG 1990 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || ||||||||||| ||| | | |||||||| || ||| | ||| | || Sbjct 1991 ATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGAT-TTTGGATTTGACATT 2049 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| ||||| || |||||||| || Sbjct 2050 CTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 2109 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 2110 AAAGATCTGCAT 2121 >seq112321 Length=3025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| | | |||| || | || || || |||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| ||||||||||| || | | |||||||| || ||| | ||| | || Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGAT-TTTGGATTTGACATT 2907 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| ||||| || |||||||| || Sbjct 2906 CTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 2847 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 2846 AAAGATCTGCAT 2835 >seq60492 Length=3139 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| | | | |||| || | ||||| || || || Sbjct 1475 TCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGTTGCTTACCAGCAAAG 1416 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || |||||||| || ||| | | ||||||||| || ||| | ||| | || Sbjct 1415 ATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGAT-TTTGGATTTGACATT 1357 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| ||||| || |||||||| || Sbjct 1356 CTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 1297 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 1296 AAAGATCTGCAT 1285 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| | | | |||| || | || || || ||||| Sbjct 1247 TCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAG 1188 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| || ||||| || || | | ||||||||| || ||| | ||| | || Sbjct 1187 ATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGAT-TTTGGATTTGACATT 1129 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| ||||| || |||||||| || Sbjct 1128 CTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 1069 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 1068 AAAGATCTGCAT 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322549867893920